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L2_057_000M1_scaffold_298

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_298_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..2099)
DNA (2097bp) protein (699aa)
O-GlcNAcase BT_4395 n=2 Tax=Parabacteroides merdae RepID=A7AFL9_9PORP
O-GlcNAcase BT_4395 {ECO:0000313|EMBL:EDN86845.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L2_057_000M1_scaffold_298_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2291..3985)
DNA (1695bp) protein (565aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFL8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86844.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4030..5997)
DNA (1968bp) protein (656aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFL7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86843.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6051..7166)
DNA (1116bp) protein (372aa)
O-succinylbenzoic acid--CoA ligase n=2 Tax=Parabacteroides merdae RepID=A7AFL6_9PORP
O-succinylbenzoic acid--CoA ligase {ECO:0000313|EMBL:EDN86842.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
O-succinylbenzoate--CoA ligase
L2_057_000M1_scaffold_298_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7141..8190)
DNA (1050bp) protein (350aa)
O-succinylbenzoate synthase n=2 Tax=Parabacteroides merdae RepID=K6BIQ0_9PORP
Putative o-succinylbenzoate synthase {ECO:0000313|EMBL:EDN86841.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative muconate cycloisomerase
L2_057_000M1_scaffold_298_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8203..9027)
DNA (825bp) protein (275aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
naphthoate synthase (EC:4.1.3.36)
Naphthoate synthase n=5 Tax=Parabacteroides RepID=A7AFL4_9PORP
L2_057_000M1_scaffold_298_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9065..10729)
DNA (1665bp) protein (555aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056887}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056850};; Menaquinone biosynthesis protein MenD {ECO:0000256|HAMAP-Rule:MF_01659}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=2 Tax=Parabacteroides merdae RepID=A7AFL3_9PORP
2-oxoglutarate decarboxylase
L2_057_000M1_scaffold_298_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10893..14759)
DNA (3867bp) protein (1289aa)
F5/8 type C domain protein n=2 Tax=Parabacteroides merdae RepID=A7AFL2_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:EDN86838.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative glycosyl hydrolase
L2_057_000M1_scaffold_298_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15111..16178
DNA (1068bp) protein (356aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Parabacteroides merdae RepID=A7AFL1_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EDN86837.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L2_057_000M1_scaffold_298_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16178..19306
DNA (3129bp) protein (1043aa)
RND transporter, HAE1/HME family, permease protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFL0_9PORP
RND transporter, HAE1/HME family, permease protein {ECO:0000313|EMBL:EDN86836.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
multidrug transporter AcrB
L2_057_000M1_scaffold_298_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19306..20673
DNA (1368bp) protein (456aa)
Outer membrane efflux protein n=2 Tax=Parabacteroides merdae RepID=A7AFK9_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN86835.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane efflux protein
L2_057_000M1_scaffold_298_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20833..21864
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86834.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_13
unknown

Not on your lists

comp(22067..22240)
DNA (174bp) protein (58aa)

This feature has no annotations

L2_057_000M1_scaffold_298_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22404..22550
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNF4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12773.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L2_057_000M1_scaffold_298_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22768..23853)
DNA (1086bp) protein (362aa)
Permease, YjgP/YjgQ family n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK4_9PORP
Permease, YjgP/YjgQ family {ECO:0000313|EMBL:EDN86830.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23866..24996)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Queuine tRNA-ribosyltransferase n=4 Tax=Parabacteroides RepID=A7AFK3_9PORP
tRNA-guanine transglycosylase
L2_057_000M1_scaffold_298_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25070..26659)
DNA (1590bp) protein (530aa)
Tat pathway signal sequence domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFK2_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN86828.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ferredoxin-type protein
L2_057_000M1_scaffold_298_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26659..27591)
DNA (933bp) protein (311aa)
Tat pathway signal sequence domain protein n=3 Tax=Parabacteroides RepID=A7AFK1_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CDD13389.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L2_057_000M1_scaffold_298_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27690..28484
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFK0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86826.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28784..29959)
DNA (1176bp) protein (392aa)
5-aminoimidazole-4-carboxamide ribonucleotide transformylase (EC:2.1.2.3)
AICARFT/IMPCHase bienzyme n=2 Tax=Parabacteroides merdae RepID=A7AFJ9_9PORP
AICARFT/IMPCHase bienzyme {ECO:0000313|EMBL:EDN86825.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_298_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29980..30471)
DNA (492bp) protein (164aa)
Putative isopentenyl-diphosphate delta-isomerase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AFJ8_9PORP
Putative isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:EDN86824.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
NTP pyrophosphohydrolase
L2_057_000M1_scaffold_298_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30586..32664)
DNA (2079bp) protein (693aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA topoisomerase n=2 Tax=Parabacteroides merdae RepID=A7AFJ6_9PORP
DNA topoisomerase
L2_057_000M1_scaffold_298_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32796..33344)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AFJ4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86820.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_298_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33472..34245)
DNA (774bp) protein (258aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6C5F3_9PORP
Putative prephenate dehydrogenase {ECO:0000313|EMBL:EDN86819.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
chorismate mutase/prephenate dehydratase
L2_057_000M1_scaffold_298_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34348..35418)
DNA (1071bp) protein (357aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=3 Tax=Parabacteroides RepID=K6B657_9PORP
Putative 3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EDN86818.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phospho-2-dehydro-3-deoxyheptonate aldolase
L2_057_000M1_scaffold_298_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35506..36693)
DNA (1188bp) protein (396aa)
Aminotransferase, class I/II n=2 Tax=Parabacteroides merdae RepID=A7AFJ1_9PORP
Aminotransferase, class I/II {ECO:0000313|EMBL:EDN86817.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
aminotransferase
L2_057_000M1_scaffold_298_27
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36668..37513)
DNA (846bp) protein (282aa)
Prephenate dehydratase {ECO:0000313|EMBL:EEC97443.1}; EC=4.2.1.51 {ECO:0000313|EMBL:EEC97443.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Prephenate dehydratase n=6 Tax=Parabacteroides RepID=A7AFJ0_9PORP
prephenate dehydratase
L2_057_000M1_scaffold_298_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37899..38825)
DNA (927bp) protein (309aa)
LysR substrate binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AFI8_9PORP
LysR substrate binding domain protein {ECO:0000313|EMBL:EDN86814.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
redox-sensitive transcriptional activator OxyR
L2_057_000M1_scaffold_298_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39179..39667
DNA (489bp) protein (163aa)
DNA protection during starvation protein n=4 Tax=Parabacteroides RepID=A7AFI5_9PORP
DNA protection during starvation protein {ECO:0000313|EMBL:EDN86811.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
non-specific DNA-binding protein Dps
Displaying 29 items

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