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L2_057_000M1_scaffold_412

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_412_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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311..511
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CC78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89649.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_057_000M1_scaffold_412_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

583..1917
DNA (1335bp) protein (445aa)
MATE efflux family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEC89491.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative efflux protein, MATE family
L2_057_000M1_scaffold_412_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1914..3254
DNA (1341bp) protein (447aa)
MATE efflux family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN7_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEC89490.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
MATE efflux family protein
L2_057_000M1_scaffold_412_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3274..3930)
DNA (657bp) protein (219aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN6_9FIRM
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EEC89489.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ntcA2; global nitrogen regulator NtcA
L2_057_000M1_scaffold_412_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4077..4250)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89488.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_057_000M1_scaffold_412_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4362..4799)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89487.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_057_000M1_scaffold_412_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4852..5601
DNA (750bp) protein (250aa)
Hydrolase, TatD family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN3_9FIRM
Hydrolase, TatD family {ECO:0000313|EMBL:EEC89486.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hydrolase TatD
L2_057_000M1_scaffold_412_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5626..5988)
DNA (363bp) protein (121aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN2_9FIRM
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EEC89485.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ArsC family protein
L2_057_000M1_scaffold_412_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5981..6937)
DNA (957bp) protein (319aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN1_9FIRM
ribose-phosphate pyrophosphokinase
L2_057_000M1_scaffold_412_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6967..7968)
DNA (1002bp) protein (334aa)
UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.7.7.23 2.3.1.157)
Putative UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCN0_9FIRM
Putative UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase {ECO:0000313|EMBL:EEC89483.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_057_000M1_scaffold_412_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8059..9408)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89482.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
permease
L2_057_000M1_scaffold_412_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9436..10047)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89481.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted amidophosphoribosyltransferases
L2_057_000M1_scaffold_412_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10044..10955)
DNA (912bp) protein (304aa)
Helicase C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM7_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EEC89480.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
L2_057_000M1_scaffold_412_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10927..11211)
DNA (285bp) protein (95aa)
Helicase C-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM7_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EEC89480.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
L2_057_000M1_scaffold_412_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11249..12487)
DNA (1239bp) protein (413aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEC89479.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEC89479.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
aspartate-tyrosine-aromatic aminotransferase (EC:2.6.1.83)
Aminotransferase, class I/II n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM6_9FIRM
L2_057_000M1_scaffold_412_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(12631..12840)
DNA (210bp) protein (70aa)
50S ribosomal protein L31 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM5_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L31P
L2_057_000M1_scaffold_412_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12935..14629)
DNA (1695bp) protein (565aa)
Oligoendopeptidase, M3 family {ECO:0000313|EMBL:EEC89477.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEC89477.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
M3 family oligoendopeptidase (EC:3.4.24.-)
Oligoendopeptidase, M3 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM4_9FIRM
L2_057_000M1_scaffold_412_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14672..14863)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89476.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_057_000M1_scaffold_412_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14863..15846)
DNA (984bp) protein (328aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEC89475.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein
L2_057_000M1_scaffold_412_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15849..16868)
DNA (1020bp) protein (340aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEC89474.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
oligopeptide/dipeptide ABC transporter ATPase
L2_057_000M1_scaffold_412_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16884..17795)
DNA (912bp) protein (304aa)
ABC transporter, permease protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCM0_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEC89473.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
peptide ABC transporter permease
L2_057_000M1_scaffold_412_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17809..18792)
DNA (984bp) protein (328aa)
ABC transporter, permease protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCL9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEC89472.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
appB; Oligopeptide transport system permease protein AppB
L2_057_000M1_scaffold_412_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18973..20685)
DNA (1713bp) protein (571aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCL8_9FIRM
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEC89471.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
extracellular solute-binding protein
L2_057_000M1_scaffold_412_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21070..21591
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89520.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_057_000M1_scaffold_412_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21592..23397)
DNA (1806bp) protein (602aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glucosamine--fructose-6-phosphateaminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK7_9FIRM
L2_057_000M1_scaffold_412_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23638..24516)
DNA (879bp) protein (293aa)
ParB-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK6_9FIRM
ParB-like protein {ECO:0000313|EMBL:EEC89518.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ParB-like partition protein
L2_057_000M1_scaffold_412_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24519..25295)
DNA (777bp) protein (259aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK5_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEC89517.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
chromosome partitioning ATPase
L2_057_000M1_scaffold_412_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25298..25999)
DNA (702bp) protein (234aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK4_9FIRM
methyltransferase gidB
L2_057_000M1_scaffold_412_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26136..26723
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89515.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_057_000M1_scaffold_412_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26726..27370
DNA (645bp) protein (215aa)
RelA/SpoT domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCK2_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:EEC89514.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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