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L2_057_000M1_scaffold_466

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_466_1
unknown

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comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

L2_057_000M1_scaffold_466_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(153..734)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ5_9FIRM
L2_057_000M1_scaffold_466_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(884..2317)
DNA (1434bp) protein (478aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Trigger factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ4_9FIRM
tig; trigger factor
L2_057_000M1_scaffold_466_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2468..3154)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47781.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L2_057_000M1_scaffold_466_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3164..4648)
DNA (1485bp) protein (495aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ2_9FIRM
Threonine synthase {ECO:0000313|EMBL:EGJ47780.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_057_000M1_scaffold_466_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(4798..5166)
DNA (369bp) protein (123aa)
Endonuclease n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAJ3_9FIRM
UPF0102 protein N510_02418 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_057_000M1_scaffold_466_7
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(5163..5771)
DNA (609bp) protein (203aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCV6_9FIRM
L2_057_000M1_scaffold_466_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5798..6676)
DNA (879bp) protein (293aa)
Ribosome biogenesis GTPase A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ1_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative GTP-binding protein
L2_057_000M1_scaffold_466_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6760..7101)
DNA (342bp) protein (114aa)
50S ribosomal protein L19 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBQ0_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplS; 50S ribosomal protein L19
L2_057_000M1_scaffold_466_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7303..8100)
DNA (798bp) protein (266aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU2_9FIRM
hypothetical protein
L2_057_000M1_scaffold_466_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8088..8795)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47819.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_466_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8891..9094)
DNA (204bp) protein (68aa)
Hybrid cluster protein-associated redox disulfide domain n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT9_9FIRM
Hybrid cluster protein-associated redox disulfide domain {ECO:0000313|EMBL:EGJ47817.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_466_13
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

9538..9750
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LIC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87233.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Putative HTH-type transcriptional regulator
L2_057_000M1_scaffold_466_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9819..10100)
DNA (282bp) protein (94aa)
CxxC-x17-CxxC domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT7_9FIRM
CxxC-x17-CxxC domain-containing protein {ECO:0000313|EMBL:EGJ47815.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_466_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10164..10754)
DNA (591bp) protein (197aa)
RNA polymerase sigma-H factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT6_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EGJ47814.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative RNA polymerase sigma factor
L2_057_000M1_scaffold_466_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(10886..12253)
DNA (1368bp) protein (456aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YE01_9FIRM
L2_057_000M1_scaffold_466_17
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(12372..13442)
DNA (1071bp) protein (357aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YBR0_9FIRM
L2_057_000M1_scaffold_466_18
unknown

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comp(13641..13763)
DNA (123bp) protein (41aa)

This feature has no annotations

L2_057_000M1_scaffold_466_19
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13760..14095)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TYI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72966.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L2_057_000M1_scaffold_466_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14197..14715)
DNA (519bp) protein (173aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT0_9FIRM
L2_057_000M1_scaffold_466_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14804..15325)
DNA (522bp) protein (174aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBS8_9FIRM
L2_057_000M1_scaffold_466_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15653..16504)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47367.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_466_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16690..17622
DNA (933bp) protein (311aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAI8_9FIRM
Cysteine synthase A {ECO:0000313|EMBL:EGJ47366.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_057_000M1_scaffold_466_24
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(17725..19224)
DNA (1500bp) protein (500aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZJA5_9FIRM
L2_057_000M1_scaffold_466_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19234..20232)
DNA (999bp) protein (333aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDM97546.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EDM97546.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2F9_9FIRM
L2_057_000M1_scaffold_466_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20266..21561)
DNA (1296bp) protein (432aa)
Galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBL6_9FIRM
Galactokinase {ECO:0000313|EMBL:EGJ47744.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_057_000M1_scaffold_466_27
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21682..22719)
DNA (1038bp) protein (346aa)
Sugar-binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2F6_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDM97543.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
msmR; LacI family transcriptional regulator
L2_057_000M1_scaffold_466_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22793..23809)
DNA (1017bp) protein (339aa)
Sugar-binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRT1_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDN01341.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
mglB; methyl-galactoside transporter subunit ; periplasmic-binding component of ABC superfamily
L2_057_000M1_scaffold_466_29
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23826..24773)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01342.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family
L2_057_000M1_scaffold_466_30
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24770..25783)
DNA (1014bp) protein (338aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRT3_9FIRM
putative signal transduction protein
Displaying 30 items

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