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L2_057_000M1_scaffold_729

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_729_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..707
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47130.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dioxygenases related to 2-nitropropane dioxygenase
L2_057_000M1_scaffold_729_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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704..1633
DNA (930bp) protein (310aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
[Acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9V1_9FIRM
L2_057_000M1_scaffold_729_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1638..2381
DNA (744bp) protein (248aa)
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U9_9FIRM
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EGJ47127.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_057_000M1_scaffold_729_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2404..3645
DNA (1242bp) protein (414aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U8_9FIRM
L2_057_000M1_scaffold_729_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3649..4074
DNA (426bp) protein (142aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U7_9FIRM
beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
L2_057_000M1_scaffold_729_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4147..4608
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9U6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47124.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Transcriptional regulators
L2_057_000M1_scaffold_729_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4690..5433)
DNA (744bp) protein (248aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDF2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative RNA polymerase sigma factor
L2_057_000M1_scaffold_729_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5430..5867)
DNA (438bp) protein (146aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDF1_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:EGJ46847.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_057_000M1_scaffold_729_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5886..6191)
DNA (306bp) protein (102aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDF0_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
anti-sigma F factor antagonist
L2_057_000M1_scaffold_729_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6442..7809
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46845.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
MATE efflux family protein
L2_057_000M1_scaffold_729_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7856..8698
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00953.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_057_000M1_scaffold_729_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8785..9291)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46844.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_729_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9341..9706)
DNA (366bp) protein (122aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mRNA interferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE7_9FIRM
endoribonuclease
L2_057_000M1_scaffold_729_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9916..11046)
DNA (1131bp) protein (377aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE6_9FIRM
L2_057_000M1_scaffold_729_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(11080..11646)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13617.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L2_057_000M1_scaffold_729_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11707..13392)
DNA (1686bp) protein (562aa)
YjeF family domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE4_9FIRM
YjeF family domain-containing protein {ECO:0000313|EMBL:EGJ46840.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_057_000M1_scaffold_729_17
unknown

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comp(13389..13895)
DNA (507bp) protein (169aa)

This feature has no annotations

L2_057_000M1_scaffold_729_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13997..14914)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46839.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
SufBD protein
L2_057_000M1_scaffold_729_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15045..15773)
DNA (729bp) protein (243aa)
Fe-S cluster assembly ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE2_9FIRM
Fe-S cluster assembly ATP-binding protein {ECO:0000313|EMBL:EGJ46838.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
Displaying 19 items

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