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L2_057_000M1_scaffold_307

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_307_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(143..595)
DNA (453bp) protein (151aa)
Hsp20/alpha crystallin family protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CPX4_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EDY32734.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Molecular chaperone (small heat shock protein)
L2_057_000M1_scaffold_307_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(913..4416)
DNA (3504bp) protein (1168aa)
alpha-L-arabinofuranosidase (EC:3.2.1.55)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C8S3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23823.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_307_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4604..6949)
DNA (2346bp) protein (782aa)
Ferrous iron transporter B n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C9P6_9FIRM
Ferrous iron transporter B {ECO:0000313|EMBL:ETD23822.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ferrous iron transporter FeoB
L2_057_000M1_scaffold_307_4
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7150..7410)
DNA (261bp) protein (87aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSR0_9FIRM
CRISPR-associated protein Cas2
L2_057_000M1_scaffold_307_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7420..9327)
DNA (1908bp) protein (636aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSR1_9FIRM
CRISPR-associated protein Cas1
L2_057_000M1_scaffold_307_6
unknown

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10390..10500
DNA (111bp) protein (37aa)

This feature has no annotations

L2_057_000M1_scaffold_307_7
unknown

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comp(11072..11275)
DNA (204bp) protein (68aa)

This feature has no annotations

L2_057_000M1_scaffold_307_8
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(11321..12043)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4U0_9FIRM
CRISPR-associated endoribonuclease {ECO:0000256|PIRNR:PIRNR005054}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated protein Cas6
L2_057_000M1_scaffold_307_9
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12046..14046)
DNA (2001bp) protein (667aa)
CRISPR-associated protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G061_9FIRM
CRISPR-associated protein {ECO:0000313|EMBL:EEG91931.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L2_057_000M1_scaffold_307_10
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(14047..14418)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VM09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93226.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L2_057_000M1_scaffold_307_11
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14418..15743)
DNA (1326bp) protein (442aa)
CRISPR-associated RAMP protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G059_9FIRM
CRISPR-associated RAMP protein {ECO:0000313|EMBL:EEG91929.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L2_057_000M1_scaffold_307_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15740..17830)
DNA (2091bp) protein (697aa)
CRISPR-associated RAMP protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G058_9FIRM
CRISPR-associated RAMP protein {ECO:0000313|EMBL:EEG91928.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_057_000M1_scaffold_307_13
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17814..19322)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G057_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91927.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_057_000M1_scaffold_307_14
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19346..19702)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G056_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91926.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
CRISPR-associated protein, putative
L2_057_000M1_scaffold_307_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19727..21187)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0G055_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91925.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L2_057_000M1_scaffold_307_16
unknown

Not on your lists

comp(21255..21491)
DNA (237bp) protein (79aa)

This feature has no annotations

L2_057_000M1_scaffold_307_17
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21454..21987)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MQ69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF02511.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
uncharacterized domain HDIG
L2_057_000M1_scaffold_307_18
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22150..23472)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6R747_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC38731.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
L2_057_000M1_scaffold_307_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23648..24472)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C989_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74676.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_057_000M1_scaffold_307_20
unknown

Not on your lists

comp(24511..24933)
DNA (423bp) protein (141aa)

This feature has no annotations

L2_057_000M1_scaffold_307_21
unknown

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comp(25030..25278)
DNA (249bp) protein (83aa)

This feature has no annotations

L2_057_000M1_scaffold_307_22
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25430..25723)
DNA (294bp) protein (98aa)
Transcriptional regulator n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LGT9_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCY76694.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
Helix-turn-helix.
L2_057_000M1_scaffold_307_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25875..27257)
DNA (1383bp) protein (461aa)
MATE efflux family protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CPX7_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDY32737.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
putative efflux protein, MATE family
L2_057_000M1_scaffold_307_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27250..27942)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C9X7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23820.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
4'-phosphopantetheinyl transferase
L2_057_000M1_scaffold_307_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28316..28873
DNA (558bp) protein (186aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C8Y1_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted membrane protein
L2_057_000M1_scaffold_307_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28850..29509)
DNA (660bp) protein (220aa)
Acetyltransferase, GNAT family n=2 Tax=Ruminococcus lactaris RepID=B5CNN6_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDY33317.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Acetyltransferases
L2_057_000M1_scaffold_307_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29570..31657)
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33316.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Peptidase family M28.
L2_057_000M1_scaffold_307_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31891..32949
DNA (1059bp) protein (353aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNN3_9FIRM
L2_057_000M1_scaffold_307_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32946..34337
DNA (1392bp) protein (464aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNN2_9FIRM
L2_057_000M1_scaffold_307_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34505..36085)
DNA (1581bp) protein (527aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C8R4_9FIRM
Displaying items 1-30 of 34 in total

View Taxonomy