ggKbase home page

L2_057_000M1_scaffold_328

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_328_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1067)
DNA (1065bp) protein (355aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Archaeal/vacuolar-type H+-ATPase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain n=2 Tax=Ruminococcus lactaris RepID=B5CT95_9FIRM
L2_057_000M1_scaffold_328_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1060..1647)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CF55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25371.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Archaeal/vacuolar-type H+-ATPase subunit E
L2_057_000M1_scaffold_328_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1699..2007)
DNA (309bp) protein (103aa)
Archaeal/vacuolar-type H+-ATPase subunit F (EC:3.6.3.14)
ATP synthase, subunit F n=2 Tax=Ruminococcus lactaris RepID=B5CT93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25372.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_328_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2020..2457)
DNA (438bp) protein (146aa)
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C n=2 Tax=Ruminococcus lactaris RepID=B5CT92_9FIRM
ATP synthase subunit C {ECO:0000313|EMBL:EDY31514.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_328_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2497..4419)
DNA (1923bp) protein (641aa)
Archaeal/vacuolar-type H+-ATPase subunit I (EC:3.6.3.14)
Outer membrane insertion signal domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT91_9FIRM
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_328_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4416..5462)
DNA (1047bp) protein (349aa)
Archaeal/vacuolar-type H+-ATPase subunit C (EC:3.6.3.14)
ATP synthase, subunit C n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT90_9FIRM
ATP synthase, subunit C {ECO:0000313|EMBL:EDY31512.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_328_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5466..5777)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31511.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L2_057_000M1_scaffold_328_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5914..6567
DNA (654bp) protein (218aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT88_9FIRM
L2_057_000M1_scaffold_328_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7098..7295
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=2 Tax=Ruminococcus lactaris RepID=B5CT85_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
protein translocase subunit secE/sec61 gamma
L2_057_000M1_scaffold_328_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7321..7839
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=2 Tax=Ruminococcus lactaris RepID=B5CT84_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
transcription antitermination protein nusG
L2_057_000M1_scaffold_328_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7893..8318
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=2 Tax=Ruminococcus lactaris RepID=B5CT83_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
LSU ribosomal protein L11P
L2_057_000M1_scaffold_328_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8500..9192
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=2 Tax=Ruminococcus lactaris RepID=B5CT82_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ribosomal protein L1, bacterial/chloroplast
L2_057_000M1_scaffold_328_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9654..10196
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CE62_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
rplJ; 50S ribosomal protein L10
L2_057_000M1_scaffold_328_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10294..10665
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Ruminococcus lactaris RepID=B5CT80_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
LSU ribosomal protein L12P
L2_057_000M1_scaffold_328_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10998..14861
DNA (3864bp) protein (1288aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=root RepID=B5CT78_9FIRM
L2_057_000M1_scaffold_328_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14880..18602
DNA (3723bp) protein (1241aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Ruminococcus lactaris RepID=B5CT77_9FIRM
L2_057_000M1_scaffold_328_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18982..20253
DNA (1272bp) protein (424aa)
Galactose/glucose-binding lipoprotein family protein n=2 Tax=Ruminococcus lactaris RepID=B5CT76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25386.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_057_000M1_scaffold_328_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20343..21851
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CT75_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY31497.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_328_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21870..23522
DNA (1653bp) protein (551aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Ruminococcus lactaris RepID=B5CT74_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDY31496.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L2_057_000M1_scaffold_328_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23734..25335
DNA (1602bp) protein (534aa)
Response regulator receiver domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CT72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25389.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
two component transcriptional regulator, AraC family
L2_057_000M1_scaffold_328_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25376..27268
DNA (1893bp) protein (631aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CT71_9FIRM
L2_057_000M1_scaffold_328_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27252..28226
DNA (975bp) protein (325aa)
Sugar-binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CT70_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDY31492.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_057_000M1_scaffold_328_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28246..29259
DNA (1014bp) protein (338aa)
Sugar-binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CT69_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDY31491.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_057_000M1_scaffold_328_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29305..30027
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CT68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25393.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_057_000M1_scaffold_328_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30168..30311)
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CT67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31489.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_328_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30421..31131)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25395.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
winged helix family two component transcriptional regulator
L2_057_000M1_scaffold_328_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31134..32210)
DNA (1077bp) protein (359aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CF86_9FIRM
L2_057_000M1_scaffold_328_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32348..33532)
DNA (1185bp) protein (395aa)
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:EDY31486.1}; EC=2.7.6.1 {ECO:0000313|EMBL:EDY31486.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=2 Tax=Ruminococcus lactaris RepID=B5CT64_9FIRM
L2_057_000M1_scaffold_328_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33543..34529)
DNA (987bp) protein (329aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8CDA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25398.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
replicative DNA helicase loader DnaI
L2_057_000M1_scaffold_328_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34607..35725)
DNA (1119bp) protein (373aa)
DnaD domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CT62_9FIRM
DnaD domain protein {ECO:0000313|EMBL:EDY31484.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DnaD and phage-associated domain
Displaying items 1-30 of 35 in total

View Taxonomy