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L2_057_000M1_scaffold_476

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_476_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..385)
DNA (384bp) protein (128aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase n=2 Tax=Ruminococcus lactaris RepID=B5CRH4_9FIRM
L2_057_000M1_scaffold_476_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(476..871)
DNA (396bp) protein (132aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=2 Tax=Ruminococcus lactaris RepID=B5CRH5_9FIRM
L2_057_000M1_scaffold_476_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1216..1401
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32198.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_476_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1343..2083
DNA (741bp) protein (247aa)
DNA repair protein RecO n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4X8_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
DNA repair protein RecO
L2_057_000M1_scaffold_476_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2149..3594
DNA (1446bp) protein (482aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRH8_9FIRM
L2_057_000M1_scaffold_476_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3802..5199
DNA (1398bp) protein (466aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=2 Tax=Ruminococcus lactaris RepID=B5CRI0_9FIRM
L2_057_000M1_scaffold_476_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5223..5939
DNA (717bp) protein (239aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32203.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted membrane protein
L2_057_000M1_scaffold_476_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6348..8972
DNA (2625bp) protein (875aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=2 Tax=Ruminococcus lactaris RepID=B5CMC8_9FIRM
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:ETD22428.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_476_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9225..9404
DNA (180bp) protein (60aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=C6JA84_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:EES78377.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_057_000M1_scaffold_476_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9530..10357
DNA (828bp) protein (276aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GB45_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEV00997.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATPases involved in chromosome partitioning
L2_057_000M1_scaffold_476_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10311..11039
DNA (729bp) protein (243aa)
ParB-like partition protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JA82_9FIRM
parB1; ParB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:EES78375.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_057_000M1_scaffold_476_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11036..11257
DNA (222bp) protein (74aa)
ParB-like protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GB46_9FIRM
parB1; ParB-like partition protein
ParB-like protein {ECO:0000313|EMBL:EEV00998.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_057_000M1_scaffold_476_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11447..11998
DNA (552bp) protein (184aa)
Cna protein B-type domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNZ9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04990.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_057_000M1_scaffold_476_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13158..14579)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JA74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78367.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DNA methylase
L2_057_000M1_scaffold_476_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14627..14833)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C7GB53_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04995.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_057_000M1_scaffold_476_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14848..16641)
DNA (1794bp) protein (598aa)
Cna protein B-type domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNZ9_9FIRM
Cna protein B-type domain.
Cna protein B-type domain {ECO:0000313|EMBL:CBL08601.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_057_000M1_scaffold_476_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16759..19203
DNA (2445bp) protein (815aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JA74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04996.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L2_057_000M1_scaffold_476_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19196..20182
DNA (987bp) protein (329aa)
Uncharacterized protein n=3 Tax=root RepID=C6JA59_9FIRM
Domain of unknown function DUF87.
Uncharacterized protein {ECO:0000313|EMBL:EES78352.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_057_000M1_scaffold_476_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20137..20442
DNA (306bp) protein (102aa)
TrsE-like protein n=1 Tax=Enterococcus faecalis RepID=Q6WRZ4_ENTFL
Domain of unknown function DUF87.
Uncharacterized protein {ECO:0000313|EMBL:EES78352.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_057_000M1_scaffold_476_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20458..20862
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KP19_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05012.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_057_000M1_scaffold_476_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20877..21650
DNA (774bp) protein (258aa)
Sortase, SrtB family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KP20_9FIRM
sortase, SrtB family
Sortase, SrtB family {ECO:0000313|EMBL:CBL08622.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_057_000M1_scaffold_476_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21686..22024
DNA (339bp) protein (113aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6JA56_9FIRM
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EEV00917.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
CHAP domain.
L2_057_000M1_scaffold_476_23
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22558..23424
DNA (867bp) protein (289aa)
Transcriptional regulator, AraC family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4G6_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBL14511.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_057_000M1_scaffold_476_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23427..24476
DNA (1050bp) protein (350aa)
Predicted choloylglycine hydrolase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4G5_9FIRM
Predicted choloylglycine hydrolase
Predicted choloylglycine hydrolase {ECO:0000313|EMBL:CBL14510.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_057_000M1_scaffold_476_25
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24478..24672
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P0T0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDS21777.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_057_000M1_scaffold_476_26
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24727..25083)
DNA (357bp) protein (119aa)
Na+ driven multidrug efflux pump n=2 Tax=Firmicutes RepID=Q1JB93_STRPB
Na+ driven multidrug efflux pump
Uncharacterized protein {ECO:0000313|EMBL:EGG86052.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Displaying 26 items

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