ggKbase home page

L2_057_000M1_scaffold_513

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_513_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(776..2029)
DNA (1254bp) protein (418aa)
Hydrogenase maturation GTPase HydF n=2 Tax=Ruminococcus lactaris RepID=B5CSW4_9FIRM
[FeFe] hydrogenase H-cluster maturation GTPase HydF {ECO:0000313|EMBL:ETD22331.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
iron-only hydrogenase maturation protein HydF
L2_057_000M1_scaffold_513_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2195..3457
DNA (1263bp) protein (421aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSW3_9FIRM
L2_057_000M1_scaffold_513_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3589..4746)
DNA (1158bp) protein (386aa)
Metallo-beta-lactamase domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CSW2_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EDY31664.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Uncharacterized flavoproteins
L2_057_000M1_scaffold_513_4
unknown

Not on your lists

comp(4730..4849)
DNA (120bp) protein (40aa)

This feature has no annotations

L2_057_000M1_scaffold_513_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4833..5069)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31663.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Protein of unknown function (DUF3343).
L2_057_000M1_scaffold_513_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5109..6503)
DNA (1395bp) protein (465aa)
Amino acid carrier protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSW0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EDY31662.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
amino acid carrier protein
L2_057_000M1_scaffold_513_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6772..7632
DNA (861bp) protein (287aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CSV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31661.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted SAM-dependent methyltransferases
L2_057_000M1_scaffold_513_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7770..8543)
DNA (774bp) protein (258aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5M5_9FIRM
L2_057_000M1_scaffold_513_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8577..9230)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4M1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22324.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_057_000M1_scaffold_513_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9378..9833)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4J5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22323.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
transcriptional regulator, MarR family
L2_057_000M1_scaffold_513_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9955..11760)
DNA (1806bp) protein (602aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|SAAS:SAAS00057375}; EC=6.4.1.- {ECO:0000256|SAAS:SAAS00275530};; EC=6.4.1.2 {ECO:0000256|SAAS:SAAS00057486};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-CoA carboxylase, carboxyl transferase, beta subunit n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5G6_9FIRM
L2_057_000M1_scaffold_513_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11779..13128)
DNA (1350bp) protein (450aa)
acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6D3_9FIRM
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:ETD22321.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_513_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13167..13598)
DNA (432bp) protein (144aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=2 Tax=Ruminococcus lactaris RepID=B5CSV1_9FIRM
L2_057_000M1_scaffold_513_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13621..14079)
DNA (459bp) protein (153aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSV0_9FIRM
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EDY31652.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
L2_057_000M1_scaffold_513_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14083..15321)
DNA (1239bp) protein (413aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Ruminococcus lactaris RepID=B5CSU9_9FIRM
L2_057_000M1_scaffold_513_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15340..16089)
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EDY31650.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EDY31650.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSU8_9FIRM
L2_057_000M1_scaffold_513_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16074..17003)
DNA (930bp) protein (310aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=2 Tax=Ruminococcus lactaris RepID=V8C6C8_9FIRM
L2_057_000M1_scaffold_513_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16996..17934)
DNA (939bp) protein (313aa)
putative enoyl-(acyl-carrier-protein) reductase II (EC:1.3.1.-)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22315.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_513_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17951..18175)
DNA (225bp) protein (75aa)
Acyl carrier protein n=2 Tax=Ruminococcus lactaris RepID=B5CSU5_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
acyl carrier protein
L2_057_000M1_scaffold_513_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18239..19162)
DNA (924bp) protein (308aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
3-oxoacyl-[acyl-carrier-protein] synthase III (EC:2.3.1.180 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=2 Tax=Ruminococcus lactaris RepID=B5CSU4_9FIRM
L2_057_000M1_scaffold_513_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19271..19609)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22312.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_513_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19787..20377)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CSU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31644.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
cytidylate kinase
L2_057_000M1_scaffold_513_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20391..21758)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5L0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22310.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
multidrug resistance protein, MATE family
L2_057_000M1_scaffold_513_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22045..22578)
DNA (534bp) protein (178aa)
O-6-methylguanine DNA methyltransferase (EC:2.1.1.63)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22309.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_513_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22661..22801)
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22308.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Displaying 25 items

View Taxonomy