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L2_057_000M1_scaffold_629

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_629_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..825)
DNA (825bp) protein (275aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Ruminococcus lactaris RepID=B5CR19_9FIRM
L2_057_000M1_scaffold_629_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(984..1805)
DNA (822bp) protein (274aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR18_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EDY32292.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_629_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1802..2878)
DNA (1077bp) protein (359aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR17_9FIRM
L2_057_000M1_scaffold_629_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2878..3321)
DNA (444bp) protein (148aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR16_9FIRM
Fe-S iron-sulfur cluster assembly protein, NifU family {ECO:0000313|EMBL:EDY32290.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L2_057_000M1_scaffold_629_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3405..4586)
DNA (1182bp) protein (394aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR15_9FIRM
L2_057_000M1_scaffold_629_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4644..5099)
DNA (456bp) protein (152aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Ruminococcus lactaris RepID=B5CR14_9FIRM
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EDY32288.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
transcriptional regulator, BadM/Rrf2 family
L2_057_000M1_scaffold_629_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5240..6643
DNA (1404bp) protein (468aa)
Stage V sporulation protein B n=2 Tax=Ruminococcus lactaris RepID=V8BPP9_9FIRM
Putative stage V sporulation protein B {ECO:0000313|EMBL:EDY32287.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L2_057_000M1_scaffold_629_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6588..7127)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BQV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17162.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L2_057_000M1_scaffold_629_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7197..7736)
DNA (540bp) protein (180aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Ruminococcus lactaris RepID=B5CR11_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:EDY32285.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_629_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7880..9439)
DNA (1560bp) protein (520aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Ribonuclease Y n=2 Tax=Ruminococcus lactaris RepID=B5CR10_9FIRM
metal dependent phosphohydrolase
L2_057_000M1_scaffold_629_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9520..10134)
DNA (615bp) protein (205aa)
Regulatory protein RecX n=2 Tax=Ruminococcus lactaris RepID=B5CR09_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
recX; recombination regulator RecX
L2_057_000M1_scaffold_629_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10131..11252)
DNA (1122bp) protein (374aa)
Protein RecA n=2 Tax=Ruminococcus lactaris RepID=B5CR08_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
protein RecA
L2_057_000M1_scaffold_629_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11554..12192)
DNA (639bp) protein (213aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=2 Tax=Ruminococcus lactaris RepID=B5CR06_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EDY32280.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_057_000M1_scaffold_629_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12195..12743)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CR05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32279.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L2_057_000M1_scaffold_629_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12703..14526)
DNA (1824bp) protein (608aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8BQQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17155.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_057_000M1_scaffold_629_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14541..15539)
DNA (999bp) protein (333aa)
Sugar-binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CR03_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EDY32276.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_057_000M1_scaffold_629_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15737..16039
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CR01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32275.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Protein of unknown function (DUF1292).
L2_057_000M1_scaffold_629_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16042..17871)
DNA (1830bp) protein (610aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR00_9FIRM
L2_057_000M1_scaffold_629_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17885..19192)
DNA (1308bp) protein (436aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=2 Tax=Ruminococcus lactaris RepID=B5CQZ9_9FIRM
Displaying 19 items

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