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L2_057_000M1_scaffold_163

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_163_1
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..1920)
DNA (1920bp) protein (640aa)
5'-nucleotidase (EC:3.1.3.5)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BZ70_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM82834.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
L2_057_000M1_scaffold_163_2
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2236..2496)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=4 Tax=Faecalibacterium RepID=D4JXJ9_9FIRM
SSU ribosomal protein S20P
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_057_000M1_scaffold_163_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2674..3459
DNA (786bp) protein (262aa)
GPR endopeptidase {ECO:0000313|EMBL:EEU97922.1}; EC=3.4.24.78 {ECO:0000313|EMBL:EEU97922.1};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Germination protease. (EC:3.4.24.78)
GPR endopeptidase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2K9_9FIRM
L2_057_000M1_scaffold_163_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3544..4662
DNA (1119bp) protein (373aa)
Stage II sporulation protein P n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXJ7_9FIRM
stage II sporulation protein P
Stage II sporulation protein P {ECO:0000313|EMBL:CBK98746.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_057_000M1_scaffold_163_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5021..6409
DNA (1389bp) protein (463aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Asparagine--tRNA ligase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KB39_9FIRM
L2_057_000M1_scaffold_163_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6469..7347)
DNA (879bp) protein (293aa)
LysR substrate binding domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJE8_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EFQ06707.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Transcriptional regulator
L2_057_000M1_scaffold_163_7
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8195..8893)
DNA (699bp) protein (233aa)
Methyltransferase YaeB family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QC25_9FIRM
Methyltransferase YaeB family {ECO:0000313|EMBL:CDC30599.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
conserved hypothetical protein TIGR00104
L2_057_000M1_scaffold_163_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8908..9126)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP22030.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L2_057_000M1_scaffold_163_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9259..9501
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0S5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99874.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_057_000M1_scaffold_163_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9498..9797
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95367.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L2_057_000M1_scaffold_163_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9880..10062)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0S7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99876.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_057_000M1_scaffold_163_12
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10473..11000
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PUV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC28198.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
hypothetical protein
L2_057_000M1_scaffold_163_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11151..11396
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ06514.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L2_057_000M1_scaffold_163_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11804..13075)
DNA (1272bp) protein (424aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65145.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
arabinose efflux permease family protein
L2_057_000M1_scaffold_163_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13150..13959)
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65144.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
cobalt ABC transporter permease
L2_057_000M1_scaffold_163_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14006..14641)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65143.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
putative membrane spanning protein
L2_057_000M1_scaffold_163_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14711..15529)
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65142.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ABC transporter ATP-binding protein
L2_057_000M1_scaffold_163_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15531..16388)
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65141.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L2_057_000M1_scaffold_163_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16385..17155)
DNA (771bp) protein (257aa)
Uridine phosphorylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY32_9FIRM
Uridine phosphorylase {ECO:0000313|EMBL:EHL65140.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
uridine phosphorylase
L2_057_000M1_scaffold_163_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17194..17925)
DNA (732bp) protein (244aa)
Uridine phosphorylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY31_9FIRM
Uridine phosphorylase {ECO:0000313|EMBL:EHL65139.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
purine or other phosphorylase family 1
L2_057_000M1_scaffold_163_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17998..18423)
DNA (426bp) protein (142aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY30_9FIRM
L2_057_000M1_scaffold_163_22
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18901..19674
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RY29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL65137.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Transcriptional regulator, DeoR family
L2_057_000M1_scaffold_163_23
unknown

Not on your lists

comp(19851..20291)
DNA (441bp) protein (147aa)

This feature has no annotations

L2_057_000M1_scaffold_163_24
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20600..21445)
DNA (846bp) protein (282aa)
Methyltransferase domain. (EC:2.1.1.51)
Predicted 23S rRNA m(1)G methyltransferase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QIK2_9FIRM
Predicted 23S rRNA m(1)G methyltransferase {ECO:0000313|EMBL:CDC30741.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_057_000M1_scaffold_163_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21442..23328)
DNA (1887bp) protein (629aa)
Superfamily II DNA and RNA helicases (EC:3.6.1.-)
DEAD/DEAH box helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8I8_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEU95693.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L2_057_000M1_scaffold_163_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23424..24722)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S6D4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP23038.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L2_057_000M1_scaffold_163_27
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24813..25931)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QJK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC31031.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
hypothetical protein
L2_057_000M1_scaffold_163_28
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25960..26568)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q2X1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC31033.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfA
L2_057_000M1_scaffold_163_29
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26565..27290)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q5N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC31035.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfE
L2_057_000M1_scaffold_163_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27287..28297)
DNA (1011bp) protein (337aa)
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXM7_9FIRM
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
Predicted NADH:ubiquinone oxidoreductase, subunit RnfD {ECO:0000313|EMBL:CBK98776.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying items 1-30 of 60 in total

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