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L2_057_048G1_scaffold_54

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Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_048G1_scaffold_54_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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162..662
DNA (501bp) protein (167aa)
photosystem reaction center subunit H n=1 Tax=Clostridium beijerinckii RepID=UPI0002E78D65
PRC-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:ETD71506.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_057_048G1_scaffold_54_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

640..1671
DNA (1032bp) protein (344aa)
Permease n=2 Tax=Clostridium botulinum B RepID=B2THM9_CLOBB
permease
Permease {ECO:0000313|EMBL:ACD24042.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L2_057_048G1_scaffold_54_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1976..4615
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H378_9CLOT
L2_057_048G1_scaffold_54_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4749..5006
DNA (258bp) protein (86aa)
UPF0297 protein CLH_1126 n=4 Tax=Clostridium botulinum RepID=Y1126_CLOBA
hypothetical protein
UPF0297 protein SR42_10475 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_057_048G1_scaffold_54_5
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5059..5478
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Putative Holliday junction resolvase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEU1_9CLOT
hypothetical protein
L2_057_048G1_scaffold_54_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5554..5823
DNA (270bp) protein (90aa)
UPF0473 protein CLH_1128 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=Y1128_CLOBA
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_057_048G1_scaffold_54_7
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5849..6310
DNA (462bp) protein (154aa)
Putative Probable transcription regulator n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EJY3_9CLOT
ferric uptake regulator family protein
Putative Probable transcription regulator {ECO:0000313|EMBL:CDG01532.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
L2_057_048G1_scaffold_54_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6351..8018
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
Ribonuclease J 1 {ECO:0000313|EMBL:AGX42335.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX42335.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Ribonuclease J 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP12_CLOSA
L2_057_048G1_scaffold_54_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8155..9981
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
L2_057_048G1_scaffold_54_10
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10064..11116
DNA (1053bp) protein (351aa)
Aminodeoxychorismate lyase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCM7_9CLOT
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EHI98370.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L2_057_048G1_scaffold_54_11
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11131..11775
DNA (645bp) protein (215aa)
O-methyltransferase family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3X0_CLOBA
O-methyltransferase family protein
O-methyltransferase, family 3 {ECO:0000313|EMBL:AGF55024.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_057_048G1_scaffold_54_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11781..13016
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7Q8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98223.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidase U32
L2_057_048G1_scaffold_54_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13039..13656
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uridine kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F912_9CLOT
L2_057_048G1_scaffold_54_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13717..15318
DNA (1602bp) protein (534aa)
Penicillin-binding protein 2 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXY9_CLOBO
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_057_048G1_scaffold_54_15
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15457..16155
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSG7_CLOB8
sporulation sigma factor SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_057_048G1_scaffold_54_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16256..17311
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGP7_9CLOT
Twitching motility protein {ECO:0000313|EMBL:EEH98219.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
twitching motility family protein
L2_057_048G1_scaffold_54_17
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17606..18823
DNA (1218bp) protein (406aa)
Cell division protein FtsA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MF71_9CLOT
ftsA; cell division protein FtsA
Cell division protein FtsA {ECO:0000313|EMBL:AGF55028.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_057_048G1_scaffold_54_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18810..19958
DNA (1149bp) protein (383aa)
Cell division protein FtsZ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP87_CLOSA
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_057_048G1_scaffold_54_19
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20325..21128
DNA (804bp) protein (268aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; Stage II sporulation protein GA {ECO:0000256|PIRNR:PIRNR018571}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
spoIIGA; sigma-E processing peptidase spoiiga (EC:3.4.23.-)
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q1T4_9CLOT
L2_057_048G1_scaffold_54_20
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21140..21844
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLP9_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
sigE; RNA polymerase sigma-E factor
L2_057_048G1_scaffold_54_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21920..22720
DNA (801bp) protein (267aa)
RNA polymerase sigma-G factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H429_9CLOT
sigG; RNA polymerase sigma-G factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_057_048G1_scaffold_54_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23012..23278
DNA (267bp) protein (89aa)
Sporulation protein, YlmC/YmxH family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSC4_CLOSA
sporulation , YlmC/YmxH family protein
Uncharacterized protein {ECO:0000313|EMBL:KJU70540.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_057_048G1_scaffold_54_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23354..23806
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EJZ4_9CLOT
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_057_048G1_scaffold_54_24
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23952..24686
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0R7_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L2_057_048G1_scaffold_54_25
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24699..25397
DNA (699bp) protein (233aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJL5_9CLOT
phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AGF55036.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_057_048G1_scaffold_54_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25399..27075
DNA (1677bp) protein (559aa)
histidine kinase n=1 Tax=Clostridium botulinum RepID=UPI0002D49A8B
Histidine kinase {ECO:0000313|EMBL:KIL09397.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
two-component sensor histidine kinase
L2_057_048G1_scaffold_54_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27265..28134
DNA (870bp) protein (290aa)
Periplasmic phosphate-binding protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3Y5_CLOBA
phosphate-binding protein
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIL09398.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_057_048G1_scaffold_54_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28154..29044
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium botulinum E RepID=B2V3Y6_CLOBA
pstC; phosphate ABC transporter, permease protein PstC
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:AIY84511.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_057_048G1_scaffold_54_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29044..29925
DNA (882bp) protein (294aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Clostridium botulinum E RepID=B2V3Y7_CLOBA
pstA; phosphate ABC transporter, permease protein PstA
Phosphate ABC transporter permease {ECO:0000313|EMBL:KIL09400.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_057_048G1_scaffold_54_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29935..30684
DNA (750bp) protein (250aa)
pstB; phosphate ABC transporter, ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:AIY84745.1};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Phosphate import ATP-binding protein PstB n=1 Tax=Clostridium colicanis 209318 RepID=N9WFU3_9CLOT
Displaying items 1-30 of 99 in total

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