ggKbase home page

L2_059_000G1_scaffold_1002

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_1002_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1300
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Newport str. CVM 4176 RepID=J0FNK4_SALNE
Poxvirus D5 protein {ECO:0000313|EMBL:EGB73541.1}; TaxID=656449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TW10509.;"
putative P4-specific DNA primase
L2_059_000G1_scaffold_1002_2
unknown

Not on your lists

comp(1711..1875)
DNA (165bp) protein (55aa)

This feature has no annotations

L2_059_000G1_scaffold_1002_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1845..2717)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QSE4_CITFR
HNH endonuclease family protein {ECO:0000313|EMBL:KEL78840.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_000G1_scaffold_1002_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..3493
DNA (636bp) protein (212aa)
Endonuclease n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R4F0_CITFR
HNH endonuclease family protein {ECO:0000313|EMBL:KEL78839.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
HNH endonuclease domain-containing protein
L2_059_000G1_scaffold_1002_5
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3540..3902)
DNA (363bp) protein (121aa)
Toxic protein symE {ECO:0000313|EMBL:EIQ53034.1}; EC=3.1.-.- {ECO:0000313|EMBL:EIQ53034.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Endoribonuclease SymE n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QVU3_CITFR
yjiW; HSP20-like domain protein
L2_059_000G1_scaffold_1002_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4681..6051
DNA (1371bp) protein (457aa)
Tyrosine phenol-lyase {ECO:0000256|HAMAP-Rule:MF_00543}; EC=4.1.99.2 {ECO:0000256|HAMAP-Rule:MF_00543};; Beta-tyrosinase {ECO:0000256|HAMAP-Rule:MF_00543}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Tyrosine phenol-lyase n=3 Tax=Citrobacter RepID=J0VRN4_9ENTR
tryptophanase
L2_059_000G1_scaffold_1002_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6242..7507
DNA (1266bp) protein (422aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QU81_CITFR
Tryptophan-specific transport protein {ECO:0000313|EMBL:KEL78836.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
tryptophan permease
L2_059_000G1_scaffold_1002_8
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7519..8376
DNA (858bp) protein (286aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase n=3 Tax=Enterobacteriaceae RepID=I6F9T9_SHIFL
L2_059_000G1_scaffold_1002_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8871..10424)
DNA (1554bp) protein (518aa)
Lactate permease (LctP) family transporter n=1 Tax=Citrobacter sp. 30_2 RepID=C1MC32_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX65609.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
lactate permease
L2_059_000G1_scaffold_1002_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11006..11725
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3DN25_CITFR
Cysteine-rich domain protein {ECO:0000313|EMBL:KEL78832.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_000G1_scaffold_1002_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11736..13163
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DM22_CITFR
Amino acid dehydrogenase {ECO:0000313|EMBL:KJC07695.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
amino acid dehydrogenase
L2_059_000G1_scaffold_1002_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13156..13851
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=K8R4G2_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC13630.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_000G1_scaffold_1002_13
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13901..15244)
DNA (1344bp) protein (448aa)
High-affinity gluconate transporter n=8 Tax=Enterobacteriaceae RepID=G9SEK2_CITFR
gluconate permease
High-affinity gluconate transporter {ECO:0000313|EMBL:EIQ53025.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
L2_059_000G1_scaffold_1002_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15504..16688
DNA (1185bp) protein (395aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=2 Tax=Citrobacter freundii RepID=K8R0I7_CITFR
L2_059_000G1_scaffold_1002_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16767..18242
DNA (1476bp) protein (492aa)
D-mannonate oxidoreductase n=2 Tax=Citrobacter RepID=K8QU91_CITFR
D-mannonate oxidoreductase {ECO:0000313|EMBL:KJC13627.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
D-mannonate oxidoreductase
L2_059_000G1_scaffold_1002_16
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18423..19148
DNA (726bp) protein (242aa)
DNA-binding transcriptional repressor UxuR n=7 Tax=Enterobacteriaceae RepID=K8QSF8_CITFR
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EIQ53022.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
transcriptional regulator
L2_059_000G1_scaffold_1002_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19797..20000
DNA (204bp) protein (68aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=J1G310_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KJC13625.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_000G1_scaffold_1002_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20193..21200
DNA (1008bp) protein (336aa)
Outer membrane pore protein E n=4 Tax=Citrobacter RepID=J0LYW8_9ENTR
Porin {ECO:0000313|EMBL:KJC13624.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
porin
L2_059_000G1_scaffold_1002_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21585..22772)
DNA (1188bp) protein (396aa)
Sugar transporter n=5 Tax=Citrobacter RepID=J0M5C8_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KJC07686.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_000G1_scaffold_1002_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22870..23334)
DNA (465bp) protein (155aa)
GCN5-like N-acetyltransferase n=2 Tax=Citrobacter RepID=M3DN37_CITFR
GNAT family acetyltransferase {ECO:0000313|EMBL:KJC13622.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
GNAT family acetyltransferase
L2_059_000G1_scaffold_1002_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23348..24628)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3DM32_CITFR
Membrane protein {ECO:0000313|EMBL:KJC07684.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
L2_059_000G1_scaffold_1002_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24704..25630)
DNA (927bp) protein (309aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6F9S3_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:ETX72007.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
LysR family transcriptional regulator
L2_059_000G1_scaffold_1002_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25850..27082
DNA (1233bp) protein (411aa)
Sodium:dicarboxylate symporter n=7 Tax=Citrobacter RepID=J1G2V1_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX72008.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
sodium:dicarboxylate symporter
L2_059_000G1_scaffold_1002_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27113..28303
DNA (1191bp) protein (397aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:KJC07681.1}; EC=4.4.1.8 {ECO:0000313|EMBL:KJC07681.1};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
cystathionine beta-lyase (EC:4.4.1.8)
Cystathionine beta-lyase n=6 Tax=Citrobacter RepID=J0M5C4_9ENTR
L2_059_000G1_scaffold_1002_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28384..29625)
DNA (1242bp) protein (414aa)
Multidrug resistance protein n=3 Tax=Citrobacter RepID=J0VRL5_9ENTR
Multidrug transporter {ECO:0000313|EMBL:KJC07680.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
multidrug transporter
L2_059_000G1_scaffold_1002_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29951..30601)
DNA (651bp) protein (217aa)
Translocator protein, LysE family n=2 Tax=Citrobacter RepID=M3DM37_CITFR
Threonine transporter RhtB {ECO:0000313|EMBL:KJC13616.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
threonine transporter RhtB
L2_059_000G1_scaffold_1002_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30650..31465)
DNA (816bp) protein (272aa)
AraC family transcriptional regulator n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QVW8_CITFR
Cupin domain protein {ECO:0000313|EMBL:KEL78812.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
AraC family transcriptional regulator
L2_059_000G1_scaffold_1002_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31696..32646
DNA (951bp) protein (317aa)
Uncharacterized protein n=5 Tax=Citrobacter RepID=R1FTQ2_CITFR
Transposase {ECO:0000313|EMBL:CDL36351.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
L2_059_000G1_scaffold_1002_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32698..34110)
DNA (1413bp) protein (471aa)
Transcriptional regulator, GntR family domain / Aspartate aminotransferase {ECO:0000313|EMBL:CDL36352.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDL36352.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Transcriptional family classes i and ii n=3 Tax=Citrobacter RepID=J0VRK9_9ENTR
GntR family transcriptional regulator
L2_059_000G1_scaffold_1002_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34288..34452
DNA (165bp) protein (55aa)
Cytoplasmic protein n=7 Tax=Citrobacter RepID=J1G2Z9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX72015.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
Displaying items 1-30 of 97 in total

View Taxonomy