ggKbase home page

L2_059_000G1_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_143_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

718..1737
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZY9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87272.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_059_000G1_scaffold_143_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1836..3212)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AAM2_CLOBU
L2_059_000G1_scaffold_143_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3505..4896)
DNA (1392bp) protein (464aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
glyQS; glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase n=4 Tax=Clostridium butyricum RepID=B1R1R7_CLOBU
L2_059_000G1_scaffold_143_4
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5507..5833
DNA (327bp) protein (109aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1R8_CLOBU
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
single stranded DNA-binding protein
L2_059_000G1_scaffold_143_5
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6691..8196)
DNA (1506bp) protein (502aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
lysS; lysine--tRNA ligase LysS (EC:6.1.1.6)
Lysine--tRNA ligase n=4 Tax=Clostridium butyricum RepID=B1R1R9_CLOBU
L2_059_000G1_scaffold_143_6
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8211..8696)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=4 Tax=Clostridium butyricum RepID=B1R1S0_CLOBU
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
greA1; transcription elongation factor GreA
L2_059_000G1_scaffold_143_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9043..10008)
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
dus; tRNA-dihydrouridine synthase 1 (EC:1.-.-.-)
tRNA-dihydrouridine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J5Q1_CLOBU
L2_059_000G1_scaffold_143_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10016..10798)
DNA (783bp) protein (261aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Type III pantothenate kinase n=4 Tax=Clostridium butyricum RepID=B1R1S2_CLOBU
pantothenate kinase
L2_059_000G1_scaffold_143_9

Not on your lists

comp(10927..12597)
DNA (1671bp) protein (557aa)
fhs; formate--tetrahydrofolate ligase Fhs (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=3 Tax=Clostridium butyricum RepID=B1R1S3_CLOBU
Formate-tetrahydrofolate ligase {ECO:0000313|EMBL:ETJ16515.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_059_000G1_scaffold_143_10
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12878..14683)
DNA (1806bp) protein (602aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
ftsH1; ATP-dependent zinc metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACE2_CLOBU
L2_059_000G1_scaffold_143_11

Not on your lists

comp(14745..15284)
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1R1S6_CLOBU
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ETJ16517.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypoxanthine phosphoribosyltransferase
L2_059_000G1_scaffold_143_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15286..16665)
DNA (1380bp) protein (460aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.19)
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AAM9_CLOBU
L2_059_000G1_scaffold_143_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16814..19210)
DNA (2397bp) protein (799aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E n=2 Tax=Clostridium butyricum RepID=M8K9F2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83336.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L2_059_000G1_scaffold_143_14

Not on your lists

comp(19624..20562)
DNA (939bp) protein (313aa)
Malonate transporter n=2 Tax=Clostridium butyricum RepID=B1R1S9_CLOBU
Malonate transporter {ECO:0000313|EMBL:ETJ16520.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative malate transporter
L2_059_000G1_scaffold_143_15
unknown

Not on your lists

20768..21289
DNA (522bp) protein (174aa)

This feature has no annotations

L2_059_000G1_scaffold_143_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21440..21844)
DNA (405bp) protein (135aa)
RNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1T0_CLOBU
RNA binding protein, contains ribosomal protein S1 domain {ECO:0000313|EMBL:KJZ84730.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
RNA binding protein
L2_059_000G1_scaffold_143_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21985..22281)
DNA (297bp) protein (99aa)
Septum formation initiator n=2 Tax=Clostridium butyricum RepID=M8JG03_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83344.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
septum formation initiator
L2_059_000G1_scaffold_143_18

Not on your lists

comp(22355..22750)
DNA (396bp) protein (132aa)
Spore cortex biosynthesis protein YabQ n=3 Tax=Clostridium butyricum RepID=B1R1T2_CLOBU
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:ETJ16523.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
yabQ; spore cortex biosynthesis protein YabQ
L2_059_000G1_scaffold_143_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22760..23053)
DNA (294bp) protein (98aa)
Sporulation protein YabP n=4 Tax=Clostridium butyricum RepID=B1R1T3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84738.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
YabP family protein
L2_059_000G1_scaffold_143_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23232..23492)
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
L2_059_000G1_scaffold_143_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23557..23832)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Clostridium RepID=U5MP25_CLOSA
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:ENZ29597.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L2_059_000G1_scaffold_143_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24050..25501)
DNA (1452bp) protein (484aa)
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:KJZ84708.1}; EC=3.6.1.8 {ECO:0000313|EMBL:KJZ84708.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
MazG family protein n=4 Tax=Clostridium butyricum RepID=B1R1T6_CLOBU
MazG family protein
L2_059_000G1_scaffold_143_23

Not on your lists

comp(25517..27055)
DNA (1539bp) protein (513aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J5R6_CLOBU
Stage V sporulation protein B {ECO:0000313|EMBL:ETJ16528.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
spoVB1; stage V sporulation protein B
L2_059_000G1_scaffold_143_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27180..27731)
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU
Stage V sporulation protein T {ECO:0000313|EMBL:ENZ29600.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
spoVT; stage V sporulation protein T
L2_059_000G1_scaffold_143_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27941..28972)
DNA (1032bp) protein (344aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
prsA1; foldase protein PrsA (EC:5.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9YPN4_CLOBU
L2_059_000G1_scaffold_143_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29098..32598)
DNA (3501bp) protein (1167aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
Transcription-repair-coupling factor n=2 Tax=Clostridium butyricum RepID=M8JEP6_CLOBU
L2_059_000G1_scaffold_143_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32613..33188)
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=2 Tax=Clostridium butyricum RepID=B1R1U1_CLOBU
L2_059_000G1_scaffold_143_28
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33224..34645)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Sensory transduction histidine kinase n=2 Tax=Clostridium butyricum RepID=B1R1U2_CLOBU
integral membrane sensor signal transduction histidine kinase
L2_059_000G1_scaffold_143_29

Not on your lists

comp(34646..35332)
DNA (687bp) protein (229aa)
Transcriptional regulatory protein ResD n=4 Tax=Clostridium butyricum RepID=B1R1U3_CLOBU
Transcriptional regulatory protein ResD {ECO:0000313|EMBL:ETJ16534.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
srrA1; transcriptional regulatory protein SrrA
L2_059_000G1_scaffold_143_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35439..36404)
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Clostridium butyricum RepID=B1R1U4_CLOBU
ribose-phosphate pyrophosphokinase
Displaying items 1-30 of 94 in total

View Taxonomy