ggKbase home page

L2_059_000G1_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_236_1
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(74..748)
DNA (675bp) protein (225aa)
DNA-binding response regulator PhoP n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHM4_9FIRM
DNA-binding response regulator PhoP {ECO:0000313|EMBL:CDC47290.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
two component transcriptional regulator
L2_059_000G1_scaffold_236_2
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1386..2720
DNA (1335bp) protein (445aa)
Magnesium transporter n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JLI5_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Mg2+ transporter (mgtE)
L2_059_000G1_scaffold_236_3
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2974..4419
DNA (1446bp) protein (482aa)
Cys-rich peptide radical SAM maturase CcpM n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MHU8_9FIRM
Cys-rich peptide radical SAM maturase CcpM {ECO:0000313|EMBL:EOS70595.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
radical SAM protein
L2_059_000G1_scaffold_236_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4406..5101
DNA (696bp) protein (232aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=T2T9P9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG74283.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
peptide maturation system protein, TIGR04066 family
L2_059_000G1_scaffold_236_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5108..5368
DNA (261bp) protein (87aa)
Uncharacterized protein n=31 Tax=Clostridium difficile RepID=T2UNR1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG74107.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_059_000G1_scaffold_236_6
unknown

Not on your lists

5408..5545
DNA (138bp) protein (46aa)

This feature has no annotations

L2_059_000G1_scaffold_236_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5616..7289
DNA (1674bp) protein (558aa)
ABC transporter n=1 Tax=Clostridium sp. JC122 RepID=UPI000287D09E
Uncharacterized protein {ECO:0000313|EMBL:EGN45668.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter ATP-binding protein
L2_059_000G1_scaffold_236_8
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7286..9910
DNA (2625bp) protein (875aa)
Putative ATP synthase F0 A subunit n=1 Tax=Dorea longicatena CAG:42 RepID=R7FXG8_9FIRM
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CDE18417.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC transporter permease
L2_059_000G1_scaffold_236_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10034..10219)
DNA (186bp) protein (62aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TN06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD18023.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_059_000G1_scaffold_236_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10245..11234)
DNA (990bp) protein (330aa)
SPFH/Band 7/PHB domain protein n=2 Tax=Lachnospiraceae RepID=A7B133_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42511.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_059_000G1_scaffold_236_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11445..11840
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YXK7_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93695.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L2_059_000G1_scaffold_236_12
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12009..13658
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IPN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS23778.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
beta-fructosidase
L2_059_000G1_scaffold_236_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13646..14338
DNA (693bp) protein (231aa)
HAD hydrolase, family IA, variant 3 n=2 Tax=Clostridium RepID=B6FMU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22939.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase
L2_059_000G1_scaffold_236_14
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14341..15384
DNA (1044bp) protein (348aa)
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 n=1 Tax=Clostridium sp. CAG:149 RepID=R5MNA7_9CLOT
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 {ECO:0000313|EMBL:CCY86771.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
macro domain protein
L2_059_000G1_scaffold_236_15
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15512..16147
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=root RepID=A5Z970_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM50314.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
hypothetical protein
L2_059_000G1_scaffold_236_16
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16282..17100)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DGJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75001.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
HAD-superfamily hydrolase, subfamily IIB
L2_059_000G1_scaffold_236_17
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17097..18527)
DNA (1431bp) protein (477aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCS1_9FIRM
L2_059_000G1_scaffold_236_18
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18551..19609)
DNA (1059bp) protein (353aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCS0_9FIRM
L2_059_000G1_scaffold_236_19
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19626..21086)
DNA (1461bp) protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SF23_9FIRM
L2_059_000G1_scaffold_236_20
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21361..21615
DNA (255bp) protein (85aa)
HPr family phosphocarrier n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KMA1_9FIRM
HPr family phosphocarrier {ECO:0000313|EMBL:EOS47609.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
FruB; phosphotransferase system
L2_059_000G1_scaffold_236_21
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21663..22397)
DNA (735bp) protein (245aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6ESU5_9FIRM
L2_059_000G1_scaffold_236_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22566..22997
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22886.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_059_000G1_scaffold_236_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23009..24568
DNA (1560bp) protein (520aa)
LysM domain protein n=2 Tax=Clostridium RepID=B6FQW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22885.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LysM domain.
L2_059_000G1_scaffold_236_24
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24640..25554
DNA (915bp) protein (305aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Clostridiales RepID=B0NI09_CLOSV
L2_059_000G1_scaffold_236_25
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25527..26219
DNA (693bp) protein (231aa)
FCD domain protein n=2 Tax=Dorea RepID=A6BG57_9FIRM
FCD domain protein {ECO:0000313|EMBL:CDE20952.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
transcriptional regulator, GntR family
L2_059_000G1_scaffold_236_26
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26283..26909
DNA (627bp) protein (209aa)
Stage II sporulation protein R n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCR1_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:EGG81271.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
stage II sporulation protein R
L2_059_000G1_scaffold_236_27
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26954..28141
DNA (1188bp) protein (396aa)
Cation diffusion facilitator family transporter n=1 Tax=Dorea sp. CAG:317 RepID=R6WT18_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CDD07116.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
cation diffusion facilitator family transporter
L2_059_000G1_scaffold_236_28
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28154..28882
DNA (729bp) protein (243aa)
Acyl-ACP thioesterase (EC:3.1.2.14)
Acyl-ACP thioesterase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BG55_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:EDM63266.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
L2_059_000G1_scaffold_236_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28882..29709
DNA (828bp) protein (276aa)
S1 RNA binding domain protein n=2 Tax=Clostridium RepID=B6FQW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22879.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_059_000G1_scaffold_236_30
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30063..30632
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N8M9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79665.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Displaying items 1-30 of 83 in total

View Taxonomy