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L2_059_000G1_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_258_1
unknown

Not on your lists

3..197
DNA (195bp) protein (65aa)

This feature has no annotations

L2_059_000G1_scaffold_258_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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197..1060
DNA (864bp) protein (288aa)
UPF0272 protein BN789_00598 n=1 Tax=Clostridium sp. CAG:81 RepID=R5GF19_9CLOT
UPF0272 protein BN789_00598 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
conserved hypothetical protein TIGR00299
L2_059_000G1_scaffold_258_3
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1142..2713)
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EQC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE03677.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L2_059_000G1_scaffold_258_4
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2706..2933)
DNA (228bp) protein (76aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ELA7_9FIRM
XRE family transcriptional regulator {ECO:0000313|EMBL:KFX33635.1}; TaxID=1430331 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. G1w1.;"
XRE family transcriptional regulator
L2_059_000G1_scaffold_258_5
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2945..3460)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6XC33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD03882.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L2_059_000G1_scaffold_258_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3636..4817)
DNA (1182bp) protein (394aa)
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2Q9_9CLOT
SpoIVB peptidase {ECO:0000313|EMBL:CCX37123.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L2_059_000G1_scaffold_258_7
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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5404..5691
DNA (288bp) protein (96aa)
Cold-shock DNA-binding protein family n=2 Tax=Clostridiales RepID=D7GQ48_9FIRM
cold-shock DNA-binding protein family
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:CBL39923.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_059_000G1_scaffold_258_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5876..6118
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B248_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49635.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L2_059_000G1_scaffold_258_9
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(6199..7281)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YA33_TREAZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF80635.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L2_059_000G1_scaffold_258_10
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(7405..8790)
DNA (1386bp) protein (462aa)
MATE efflux family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZK94_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDD30882.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
putative efflux protein, MATE family
L2_059_000G1_scaffold_258_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8980..9846)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W5Y7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ40119.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
transcriptional regulator
L2_059_000G1_scaffold_258_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

10126..10887
DNA (762bp) protein (254aa)
Sporulation transcription factor Spo0A n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YHZ6_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L2_059_000G1_scaffold_258_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11041..12810)
DNA (1770bp) protein (590aa)
ABC transporter related n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A284_9CLOT
ABC transporter related {ECO:0000313|EMBL:CCX37120.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
multidrug ABC transporter ATP-binding protein
L2_059_000G1_scaffold_258_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(12810..14576)
DNA (1767bp) protein (589aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XWR4_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD28188.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
ABC transporter ATP-binding protein
L2_059_000G1_scaffold_258_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14855..15301)
DNA (447bp) protein (149aa)
NUDIX hydrolase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A4V8_9CLOT
NUDIX hydrolase {ECO:0000313|EMBL:CCX38110.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
NUDIX hydrolase
L2_059_000G1_scaffold_258_16
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15311..16189)
DNA (879bp) protein (293aa)
Aldose 1-epimerase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A2Q7_9CLOT
Aldose 1-epimerase {ECO:0000313|EMBL:CCX37118.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Galactose mutarotase and related enzymes
L2_059_000G1_scaffold_258_17
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

16339..16794
DNA (456bp) protein (152aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZCF7_9FIRM
L2_059_000G1_scaffold_258_18
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

16806..17675
DNA (870bp) protein (290aa)
MscS Mechanosensitive ion channel n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TJ28_9FIRM
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:CDC73408.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
small-conductance mechanosensitive channel
L2_059_000G1_scaffold_258_19
Methanococcus maripaludis, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(17800..18660)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis X1 RepID=G0GZS9_METMI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK19810.1}; TaxID=1053692 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus maripaludis X1.;"
L2_059_000G1_scaffold_258_20
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

18917..20278
DNA (1362bp) protein (454aa)
Putative efflux protein MATE family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XY40_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDD28668.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
putative efflux protein, MATE family
L2_059_000G1_scaffold_258_21
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20357..21565)
DNA (1209bp) protein (403aa)
Transporter, major facilitator family protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L956_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EET62795.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Major Facilitator Superfamily.
L2_059_000G1_scaffold_258_22
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21684..22586
DNA (903bp) protein (301aa)
Transcriptional regulator AraC family n=1 Tax=Coprococcus comes CAG:19 RepID=R6LVE2_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDB86096.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
transcriptional regulator, AraC family
L2_059_000G1_scaffold_258_23
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(22629..22949)
DNA (321bp) protein (107aa)
Helix-turn-helix family protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TV41_9FIRM
Helix-turn-helix family protein {ECO:0000313|EMBL:CDC77333.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
transcriptional regulator
L2_059_000G1_scaffold_258_24
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23364..24023)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LYG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63593.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acetyltransferase
L2_059_000G1_scaffold_258_25
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(24161..24397)
DNA (237bp) protein (79aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5B294_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX45531.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
XRE family transcriptional regulator
L2_059_000G1_scaffold_258_26
unknown

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24516..24806
DNA (291bp) protein (97aa)

This feature has no annotations

L2_059_000G1_scaffold_258_27
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24861..25526)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XMV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY96976.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
short-chain dehydrogenase/reductase SDR
L2_059_000G1_scaffold_258_28
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25543..26235)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XB78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY96977.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
short-chain dehydrogenase
L2_059_000G1_scaffold_258_29
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26241..26900)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XLW0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY96978.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L2_059_000G1_scaffold_258_30
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27107..27637)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ABF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36721.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
beta-xylosidase
Displaying items 1-30 of 85 in total

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