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L2_059_000G1_scaffold_375

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_375_1
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..241)
DNA (240bp) protein (80aa)
Transmembrane permease MsmF n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NI99_CLOSV
Transmembrane permease MsmF {ECO:0000313|EMBL:EDS05847.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
sugar transporter permease
L2_059_000G1_scaffold_375_2
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(272..1576)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XN28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07737.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ABC-type transport system, sugar-familyextracellular solute-binding protein
L2_059_000G1_scaffold_375_3
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1683..2738)
DNA (1056bp) protein (352aa)
Methyltransferase, MtaA/CmuA family {ECO:0000313|EMBL:EDR46273.1}; EC=2.1.1.- {ECO:0000313|EMBL:EDR46273.1};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Methyltransferase, MtaA/CmuA family n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G9B9_9FIRM
L2_059_000G1_scaffold_375_4
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2735..4297)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N4S2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78289.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
ferredoxin-containing protein
L2_059_000G1_scaffold_375_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4290..5345)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WLJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07804.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
methyltransferase, MtaA/CmuA family
L2_059_000G1_scaffold_375_6
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5353..6003)
DNA (651bp) protein (217aa)
B12 binding domain protein n=2 Tax=Clostridiales RepID=B0NFC1_CLOSV
B12 binding domain protein {ECO:0000313|EMBL:EDS06551.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
cobalamin B12-binding domain protein
L2_059_000G1_scaffold_375_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6088..6963)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KNN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN32507.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
uroporphyrinogen decarboxylase-like protein
L2_059_000G1_scaffold_375_8
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7097..8245)
DNA (1149bp) protein (383aa)
2-hydroxyglutaryl-CoA dehydratase D-component n=2 Tax=Coprococcus RepID=R6LMN6_9FIRM
2-hydroxyglutaryl-CoA dehydratase D-component {ECO:0000313|EMBL:CDB84844.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
2-hydroxyacyl-CoA dehydratase subunit beta
L2_059_000G1_scaffold_375_9
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8229..9350)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SL78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58319.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
uroporphyrinogen-III decarboxylase
L2_059_000G1_scaffold_375_10
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9368..10177)
DNA (810bp) protein (270aa)
Uncharacterized protein n=2 Tax=Dorea RepID=R6THW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58317.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
metal ion ABC transporter periplasmic protein/surface antigen
L2_059_000G1_scaffold_375_11
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10198..10866)
DNA (669bp) protein (223aa)
D-methionine transport system permease n=1 Tax=Dorea sp. 5-2 RepID=R9N4Q1_9FIRM
D-methionine transport system permease {ECO:0000313|EMBL:EOS78279.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
binding-protein-dependent transport systems inner membrane component
L2_059_000G1_scaffold_375_12
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10857..11855)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX74704.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
ABC transporter related protein
L2_059_000G1_scaffold_375_13
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12083..13237)
DNA (1155bp) protein (385aa)
hgdB; 2-hydroxyglutaryl-CoA dehydratase beta subunit HgdB (EC:4.2.1.-)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX74703.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L2_059_000G1_scaffold_375_14
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13274..14482)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N5N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78276.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L2_059_000G1_scaffold_375_15
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14659..17268)
DNA (2610bp) protein (870aa)
ATP-dependent chaperone protein ClpB n=3 Tax=root RepID=C0BD48_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
ATP-dependent chaperone ClpB
L2_059_000G1_scaffold_375_16
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17520..20963)
DNA (3444bp) protein (1148aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EDM87775.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EDM87775.1};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRF7_9FIRM
L2_059_000G1_scaffold_375_17
Streptococcus oralis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20967..22097)
DNA (1131bp) protein (377aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Streptococcus oralis SK610 RepID=I0Q2Z9_STROR
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EIC75651.1}; TaxID=1095741 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus oralis SK610.;"
hypothetical protein
L2_059_000G1_scaffold_375_18
Facklamia languida, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22084..23691)
DNA (1608bp) protein (536aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
Putative uncharacterized protein n=1 Tax=Facklamia languida CCUG 37842 RepID=H3NJW0_9LACT
Uncharacterized protein {ECO:0000313|EMBL:EHR36477.1}; TaxID=883113 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia languida CCUG 37842.;"
L2_059_000G1_scaffold_375_19
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24008..24388
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DAR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72936.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
Helix-turn-helix.
L2_059_000G1_scaffold_375_20
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24476..25684)
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Aspartokinase n=1 Tax=Coprococcus comes CAG:19 RepID=R6LV30_9FIRM
aspartate kinase
L2_059_000G1_scaffold_375_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25694..26899)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCY9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22168.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
proposed homoserine kinase
L2_059_000G1_scaffold_375_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26945..28162)
DNA (1218bp) protein (406aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Clostridium sp. D5 RepID=F0Z3R1_9CLOT
L2_059_000G1_scaffold_375_23
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28165..28605)
DNA (441bp) protein (147aa)
UPF0735 ACT domain-containing protein HMPREF0490_01783 n=4 Tax=Lachnospiraceae RepID=E9RWE6_9FIRM
UPF0735 ACT domain-containing protein HMPREF0987_01612 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
amino acid-binding ACT protein
L2_059_000G1_scaffold_375_24
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28598..29587)
DNA (990bp) protein (330aa)
Peptide chain release factor 2 n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B7V3_9FIRM
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
bacterial peptide chain release factor 2 (bRF-2)
L2_059_000G1_scaffold_375_25
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29723..32296)
DNA (2574bp) protein (858aa)
Protein translocase subunit SecA n=1 Tax=Coprococcus comes CAG:19 RepID=R6LJG0_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
protein translocase subunit secA
L2_059_000G1_scaffold_375_26
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32385..33200)
DNA (816bp) protein (272aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase n=1 Tax=Blautia sp. CAG:237 RepID=R6LXF9_9FIRM
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase {ECO:0000313|EMBL:CDB78642.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
L2_059_000G1_scaffold_375_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33332..33634)
DNA (303bp) protein (101aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25967.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative lipoprotein
L2_059_000G1_scaffold_375_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33718..34476)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=Clostridiales RepID=A7B7M1_RUMGN
L2_059_000G1_scaffold_375_29
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34575..35462)
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Coprococcus RepID=C0BAM6_9FIRM
L2_059_000G1_scaffold_375_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35590..36225)
DNA (636bp) protein (212aa)
Single-strand binding family protein n=2 Tax=Clostridiales RepID=B0NJJ7_CLOSV
Single-strand binding family protein {ECO:0000313|EMBL:EDS05074.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Single-stranded DNA-binding protein
Displaying items 1-30 of 59 in total

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