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L2_059_000G1_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_564_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..372
DNA (372bp) protein (124aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=2 Tax=Clostridium RepID=B6FV87_9CLOT
L2_059_000G1_scaffold_564_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

397..1434
DNA (1038bp) protein (346aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV86_9CLOT
L2_059_000G1_scaffold_564_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1483..1641
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22312.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_059_000G1_scaffold_564_4
unknown

Not on your lists

1799..1975
DNA (177bp) protein (59aa)

This feature has no annotations

L2_059_000G1_scaffold_564_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1968..2885
DNA (918bp) protein (306aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUX0_9CLOT
signal transduction histidine kinase
L2_059_000G1_scaffold_564_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3017..3694
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FV82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22310.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_059_000G1_scaffold_564_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3694..5175
DNA (1482bp) protein (494aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FV81_9CLOT
Signal transduction histidine kinase
L2_059_000G1_scaffold_564_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5193..5801
DNA (609bp) protein (203aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Clostridium RepID=B6FV80_9CLOT
L2_059_000G1_scaffold_564_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5813..6574
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Clostridium RepID=B6FV79_9CLOT
L2_059_000G1_scaffold_564_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6588..7262
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=2 Tax=Clostridium RepID=B6FV78_9CLOT
L2_059_000G1_scaffold_564_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7409..9643
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22305.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_059_000G1_scaffold_564_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9776..10135
DNA (360bp) protein (120aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV75_9CLOT
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEA80093.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_059_000G1_scaffold_564_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10159..12021
DNA (1863bp) protein (621aa)
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EEA80092.1}; EC=3.6.3.- {ECO:0000313|EMBL:EEA80092.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Heavy metal translocating P-type ATPase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV74_9CLOT
heavy metal translocating P-type ATPase
L2_059_000G1_scaffold_564_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12038..12562
DNA (525bp) protein (175aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV73_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEA80091.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Tetratricopeptide repeat.
L2_059_000G1_scaffold_564_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12572..13822
DNA (1251bp) protein (417aa)
GTPase HflX n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV72_9CLOT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
GTP-binding proten HflX
L2_059_000G1_scaffold_564_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13819..14442
DNA (624bp) protein (208aa)
Putative rRNA methylase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV71_9CLOT
Putative rRNA methylase {ECO:0000313|EMBL:EEA80089.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
L2_059_000G1_scaffold_564_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14324..15217)
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV70_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA80088.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC family transcriptional regulator
L2_059_000G1_scaffold_564_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15345..16202
DNA (858bp) protein (286aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Diaminopimelate epimerase n=2 Tax=Clostridium RepID=B6FV69_9CLOT
diaminopimelate epimerase
L2_059_000G1_scaffold_564_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16377..19781
DNA (3405bp) protein (1135aa)
ATP-dependent nuclease subunit B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV68_9CLOT
ATP-dependent nuclease subunit B {ECO:0000313|EMBL:EEA80086.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent nuclease subunit B
L2_059_000G1_scaffold_564_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19772..23425
DNA (3654bp) protein (1218aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV67_9CLOT
recombination helicase AddA, Firmicutes type
L2_059_000G1_scaffold_564_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23428..23691
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80084.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
L2_059_000G1_scaffold_564_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23800..24123
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22294.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, PadR family
L2_059_000G1_scaffold_564_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24120..24749
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PD99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22293.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein
L2_059_000G1_scaffold_564_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24749..25510
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV63_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80081.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Protein of unknown function (DUF2807).
L2_059_000G1_scaffold_564_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25572..25772
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FV62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22291.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small, acid-soluble spore proteins, alpha/beta type.
L2_059_000G1_scaffold_564_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25865..26545
DNA (681bp) protein (227aa)
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EEA80079.1}; EC=2.4.1.- {ECO:0000313|EMBL:EEA80079.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV61_9CLOT
Teichoic acid biosynthesis proteins
L2_059_000G1_scaffold_564_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26735..27823
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80078.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, CdaR family
L2_059_000G1_scaffold_564_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27841..28518
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=2 Tax=Clostridium RepID=B6FV59_9CLOT
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EEA80077.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cell division ATP-binding protein FtsE
L2_059_000G1_scaffold_564_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28518..29429
DNA (912bp) protein (304aa)
Cell division protein FtsX n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK02_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell division protein FtsX
L2_059_000G1_scaffold_564_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29438..30568
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22286.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane-bound metallopeptidase
Displaying items 1-30 of 54 in total

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