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L2_059_000G1_scaffold_579

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_579_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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164..949
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z312_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40545.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Protein of unknown function (DUF3298).
L2_059_000G1_scaffold_579_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(959..1678)
DNA (720bp) protein (240aa)
Acetyltransferase GNAT family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHV5_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDD40546.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Acetyltransferases
L2_059_000G1_scaffold_579_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3021..5120
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40552.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_059_000G1_scaffold_579_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5203..5544
DNA (342bp) protein (114aa)
UPF0122 protein BN593_01477 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAP2_9CLOT
UPF0122 protein BN593_01477 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_059_000G1_scaffold_579_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5575..6933
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z336_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
signal recognition particle protein
L2_059_000G1_scaffold_579_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7006..7245
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX26_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SSU ribosomal protein S16P
L2_059_000G1_scaffold_579_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7330..7557
DNA (228bp) protein (76aa)
UPF0109 protein CL3_25600 n=5 Tax=Clostridiales RepID=D4MSD7_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein CLS_25270 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_059_000G1_scaffold_579_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7619..8131
DNA (513bp) protein (171aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD44_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
16S rRNA processing protein RimM
L2_059_000G1_scaffold_579_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8166..9623
DNA (1458bp) protein (486aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHY7_9CLOT
tRNA (guanine-N1)-methyltransferase
L2_059_000G1_scaffold_579_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9797..10144
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX34_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ribosomal protein L19, bacterial type
L2_059_000G1_scaffold_579_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10254..11168
DNA (915bp) protein (305aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAR8_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ribosome biogenesis GTP-binding protein YlqF
L2_059_000G1_scaffold_579_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11155..11820
DNA (666bp) protein (222aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z345_9CLOT
L2_059_000G1_scaffold_579_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11810..12163
DNA (354bp) protein (118aa)
UPF0102 protein BN593_01486 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHZ3_9CLOT
UPF0102 protein BN593_01486 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00252
L2_059_000G1_scaffold_579_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12174..13049
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD52_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00726
L2_059_000G1_scaffold_579_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13227..13430)
DNA (204bp) protein (68aa)
Small acid-soluble spore proteins alpha/beta type n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX36_9CLOT
Small acid-soluble spore proteins alpha/beta type {ECO:0000313|EMBL:CDD40593.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Small, acid-soluble spore proteins, alpha/beta type.
L2_059_000G1_scaffold_579_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13727..14293
DNA (567bp) protein (189aa)
RNA methyltransferase RsmD family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAS2_9CLOT
RNA methyltransferase RsmD family {ECO:0000313|EMBL:CDD40594.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNA methyltransferase, RsmD family
L2_059_000G1_scaffold_579_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14317..14838
DNA (522bp) protein (174aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
pantetheine-phosphate adenylyltransferase, bacterial (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z349_9CLOT
L2_059_000G1_scaffold_579_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14825..15406
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40596.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_059_000G1_scaffold_579_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15381..16067)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40597.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_059_000G1_scaffold_579_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16369..17172
DNA (804bp) protein (268aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAT0_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDD40604.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Membrane proteins related to metalloendopeptidases
L2_059_000G1_scaffold_579_21
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17162..18670
DNA (1509bp) protein (503aa)
tRNA and rRNA cytosine-C5-methylases n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJQ7_CLOSC
tRNA and rRNA cytosine-C5-methylases
tRNA and rRNA cytosine-C5-methylases {ECO:0000313|EMBL:CBK77931.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_059_000G1_scaffold_579_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18670..20067
DNA (1398bp) protein (466aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3A1_9CLOT
pseudouridine synthase family/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L2_059_000G1_scaffold_579_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20104..22053
DNA (1950bp) protein (650aa)
UPF0313 protein BN593_01496 n=1 Tax=Clostridium sp. CAG:299 RepID=R7ADB8_9CLOT
UPF0313 protein BN593_01496 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Fe-S oxidoreductase
L2_059_000G1_scaffold_579_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22095..22943
DNA (849bp) protein (283aa)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXA3_9CLOT
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD40688.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Short-chain dehydrogenases of various substrate specificities
L2_059_000G1_scaffold_579_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22930..23499
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3B5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40690.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_059_000G1_scaffold_579_26
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23499..24473
DNA (975bp) protein (325aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=D6DJR2_CLOSC
Pseudouridine synthase RluA family {ECO:0000313|EMBL:CCY87274.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_059_000G1_scaffold_579_27
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24474..25010
DNA (537bp) protein (179aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Holliday junction resolvase RecU n=4 Tax=Clostridiales RepID=D6DJR3_CLOSC
Penicillin-binding protein-related factor A, putative recombinase
L2_059_000G1_scaffold_579_28
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25089..26318
DNA (1230bp) protein (410aa)
peptidase T. Metallo peptidase. MEROPS family M20B (EC:3.4.11.4)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Peptidase T n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJR4_CLOSC
L2_059_000G1_scaffold_579_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26372..28213)
DNA (1842bp) protein (614aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAD0_9CLOT
Asparagine synthetase {ECO:0000313|EMBL:CDD37861.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_059_000G1_scaffold_579_30
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28256..29671)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MJA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY85122.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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