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L2_059_000G1_scaffold_599

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_599_1
unknown

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comp(2..1357)
DNA (1356bp) protein (452aa)

This feature has no annotations

L2_059_000G1_scaffold_599_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1409..2572
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74492.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Serine hydrolase (FSH1).
L2_059_000G1_scaffold_599_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2760..3131
DNA (372bp) protein (124aa)
Putative endoribonuclease L-PSP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE1_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EFB75086.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
endoribonuclease L-PSP
L2_059_000G1_scaffold_599_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3183..3965)
DNA (783bp) protein (261aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.- 3.6.3.21)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG8_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75058.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_000G1_scaffold_599_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3978..4637)
DNA (660bp) protein (220aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75059.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polar amino acid ABC transporter inner membrane subunit
L2_059_000G1_scaffold_599_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4637..5467)
DNA (831bp) protein (277aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZG42_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFQ07823.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_059_000G1_scaffold_599_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5698..6717)
DNA (1020bp) protein (340aa)
Dehydrogenase, FMN-dependent n=2 Tax=Clostridiales RepID=B0NE82_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN34015.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
L2_059_000G1_scaffold_599_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6780..7982)
DNA (1203bp) protein (401aa)
Transporter, major facilitator family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3T1_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEU97263.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Major Facilitator Superfamily.
L2_059_000G1_scaffold_599_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8302..10917
DNA (2616bp) protein (872aa)
GTP-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU9_9FIRM
GTP-binding domain protein {ECO:0000313|EMBL:EFB77458.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
small GTP-binding protein domain
L2_059_000G1_scaffold_599_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11093..11746
DNA (654bp) protein (218aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB77449.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_059_000G1_scaffold_599_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11810..13060
DNA (1251bp) protein (417aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU2_9FIRM
Signal transduction histidine kinase
L2_059_000G1_scaffold_599_12
unknown

Not on your lists

13041..13907
DNA (867bp) protein (289aa)

This feature has no annotations

L2_059_000G1_scaffold_599_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14032..14622)
DNA (591bp) protein (197aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75065.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_000G1_scaffold_599_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14756..15061)
DNA (306bp) protein (102aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ3_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFB74594.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator
L2_059_000G1_scaffold_599_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15476..17368
DNA (1893bp) protein (631aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ1_9FIRM
L2_059_000G1_scaffold_599_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17464..17703
DNA (240bp) protein (80aa)
Putative acyl carrier protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ0_9FIRM
Putative acyl carrier protein {ECO:0000313|EMBL:EFB74591.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_000G1_scaffold_599_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17916..19463
DNA (1548bp) protein (516aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74590.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_000G1_scaffold_599_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19483..21258
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75073.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_000G1_scaffold_599_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21343..21861
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75127.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_000G1_scaffold_599_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21963..24236)
DNA (2274bp) protein (758aa)
Stage II sporulation protein E (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR62_9FIRM
Stage II sporulation protein E {ECO:0000313|EMBL:EFB74909.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Stage II sporulation protein E (SpoIIE).
L2_059_000G1_scaffold_599_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24601..26121)
DNA (1521bp) protein (507aa)
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EFB75283.1}; EC=2.4.1.- {ECO:0000313|EMBL:EFB75283.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
wecB; glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT7_9FIRM
L2_059_000G1_scaffold_599_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26520..27629)
DNA (1110bp) protein (370aa)
4Fe-4S binding domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5E5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU96833.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
aldo/keto reductase
L2_059_000G1_scaffold_599_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27927..28673)
DNA (747bp) protein (249aa)
artP; amino acid ABC transporter (EC:3.6.3.21)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQH1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75061.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_000G1_scaffold_599_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28660..29355)
DNA (696bp) protein (232aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQH2_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75062.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
L2_059_000G1_scaffold_599_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29604..30419)
DNA (816bp) protein (272aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQH3_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFB75063.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_059_000G1_scaffold_599_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30686..32542)
DNA (1857bp) protein (619aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR46_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74893.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L2_059_000G1_scaffold_599_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32520..34271)
DNA (1752bp) protein (584aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR47_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74894.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L2_059_000G1_scaffold_599_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34382..35287)
DNA (906bp) protein (302aa)
Putative membrane protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR48_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EFB74895.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L2_059_000G1_scaffold_599_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35412..36038)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74896.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_000G1_scaffold_599_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36127..36768)
DNA (642bp) protein (214aa)
membrane protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000372DA5C
Membrane protein, PF02588 family {ECO:0000313|EMBL:EJF42306.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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