ggKbase home page

L2_059_000G1_scaffold_646

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_000G1_scaffold_646_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..186)
DNA (186bp) protein (62aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BSP5_CLOSY
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERI75245.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
TetR family transcriptional regulator
L2_059_000G1_scaffold_646_2
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(320..1627)
DNA (1308bp) protein (436aa)
MATE efflux family protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IGK0_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EOS20926.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
MATE efflux family protein
L2_059_000G1_scaffold_646_3
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1644..2198)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IPM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS20927.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L2_059_000G1_scaffold_646_4
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2177..3556)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IGP9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EOS20928.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
MATE efflux family protein
L2_059_000G1_scaffold_646_5
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3553..4650)
DNA (1098bp) protein (366aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IG74_9FIRM
L2_059_000G1_scaffold_646_6
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4647..5864)
DNA (1218bp) protein (406aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
LL-diaminopimelate aminotransferase n=2 Tax=Clostridium clostridioforme RepID=G5I099_9CLOT
LL-diaminopimelate aminotransferase
L2_059_000G1_scaffold_646_7
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5854..7062)
DNA (1209bp) protein (403aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5ATJ6_EUBCE
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EIM57119.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
yhdR; aspartate aminotransferase
L2_059_000G1_scaffold_646_8
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7059..8231)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R9IG60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS20930.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Aspartate/tyrosine/aromatic aminotransferase
L2_059_000G1_scaffold_646_9
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8228..8722)
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R9IGK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS77422.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Transcriptional regulators
L2_059_000G1_scaffold_646_10
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8839..10248
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IGQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS20933.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
GntR family transcriptional regulator
L2_059_000G1_scaffold_646_11
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

10719..11792
DNA (1074bp) protein (358aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=N1ZQT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13033.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
DNA-binding protein
L2_059_000G1_scaffold_646_12
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11789..12646
DNA (858bp) protein (286aa)
Peptidase M23 n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T232_SYNGF
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADY56376.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L2_059_000G1_scaffold_646_13
unknown

Not on your lists

comp(12606..12824)
DNA (219bp) protein (73aa)

This feature has no annotations

L2_059_000G1_scaffold_646_14
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12858..13814)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Enterococcus faecium 10/96A RepID=U7TYJ4_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERT48536.1}; TaxID=1391465 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 10/96A.;"
aminoglycoside phosphotransferase
L2_059_000G1_scaffold_646_15
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13816..15090)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Enterococcus faecium 10/96A RepID=U7TX90_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERT48537.1}; TaxID=1391465 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 10/96A.;"
MatE efflux family protein
L2_059_000G1_scaffold_646_16
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15440..16075)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ANX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFC96478.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
L2_059_000G1_scaffold_646_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16078..16536)
DNA (459bp) protein (153aa)
Sigma-70 region 2 n=2 Tax=Clostridium hathewayi DSM 13479 RepID=D3ASN5_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EFC95177.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
RNA polymerase sigma factor, sigma-70 family
L2_059_000G1_scaffold_646_18
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16722..17471)
DNA (750bp) protein (250aa)
Short chain dehydrogenase family protein n=4 Tax=Clostridium difficile RepID=T4RUX8_CLODI
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KAJ48730.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
short-chain dehydrogenase/reductase SDR
L2_059_000G1_scaffold_646_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17539..18054)
DNA (516bp) protein (172aa)
Cyclic nucleotide-binding domain protein n=4 Tax=Clostridium difficile RepID=T4S2M7_CLODI
cAMP-binding protein-catabolite activator and regulatory subunit of cAMP-dependent protein kinase {ECO:0000313|EMBL:KJZ84184.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Crp/Fnr family transcriptional regulator
L2_059_000G1_scaffold_646_20
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18269..18634)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S073_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14210.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L2_059_000G1_scaffold_646_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18640..19563)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S075_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14211.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
plasmid segregation actin-type ATPase ParM
L2_059_000G1_scaffold_646_22
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19710..20936)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S076_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14212.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
CHC2 zinc finger.
L2_059_000G1_scaffold_646_23
unknown

Not on your lists

comp(21004..21270)
DNA (267bp) protein (89aa)

This feature has no annotations

L2_059_000G1_scaffold_646_24
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21297..22400)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S077_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14213.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L2_059_000G1_scaffold_646_25
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22481..23662)
DNA (1182bp) protein (394aa)
Phosphoadenosine phosphosulfate reductase family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AAA9_9CLOT
Phosphoadenosine phosphosulfate reductase family protein {ECO:0000313|EMBL:EFD01287.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
class V aminotransferase
L2_059_000G1_scaffold_646_26
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23734..26001)
DNA (2268bp) protein (756aa)
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S078_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14214.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L2_059_000G1_scaffold_646_27
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25970..26380)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S081_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14216.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L2_059_000G1_scaffold_646_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26381..27424)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S082_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14217.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
putative phage-type endonuclease
L2_059_000G1_scaffold_646_29
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27496..28419)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57861.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L2_059_000G1_scaffold_646_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28470..29627)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S084_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP14219.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy