ggKbase home page

L2_059_011G1_scaffold_83

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_011G1_scaffold_83_1

Not on your lists

3..335
DNA (333bp) protein (111aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=32 Tax=Staphylococcus epidermidis RepID=C5Q6J8_STAEP
ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative regulator of genetic competence clcC/mecB
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:ETJ20445.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_059_011G1_scaffold_83_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

826..2199
DNA (1374bp) protein (458aa)
DNA repair protein radA n=24 Tax=Staphylococcus epidermidis RepID=C5Q6J9_STAEP
radA; DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_059_011G1_scaffold_83_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2222..3298
DNA (1077bp) protein (359aa)
PIN domain protein n=11 Tax=Staphylococcus RepID=Q5HRM6_STAEQ
twitching motility protein PilT
PIN domain protein {ECO:0000313|EMBL:EFE58339.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_059_011G1_scaffold_83_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3708..5162
DNA (1455bp) protein (485aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Glutamyl-tRNA synthetase @ Glutamyl-tRNA(Gln) synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=23 Tax=Staphylococcus epidermidis RepID=E6JR40_STAEP
L2_059_011G1_scaffold_83_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5548..6177
DNA (630bp) protein (210aa)
Serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase; Short=SAT;; EC=2.3.1.30;; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Serine acetyltransferase n=61 Tax=Staphylococcus epidermidis RepID=CYSE_STAEQ
L2_059_011G1_scaffold_83_6

Not on your lists

6161..7561
DNA (1401bp) protein (467aa)
cysS; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Staphylococcus epidermidis RepID=F3SWH2_STAEP
Cysteine-tRNA ligase {ECO:0000313|EMBL:ETJ20440.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_059_011G1_scaffold_83_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7566..7952
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Mini-ribonuclease 3 n=2 Tax=Staphylococcus epidermidis RepID=F3SWH1_STAEP
Small protein similar to cysteinyl-tRNA synthetase
L2_059_011G1_scaffold_83_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7942..8709
DNA (768bp) protein (256aa)
TrmH family tRNA/rRNA methyltransferase YacO (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=13 Tax=Staphylococcus RepID=C5Q6K5_STAEP
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EES36953.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_059_011G1_scaffold_83_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8706..9233
DNA (528bp) protein (176aa)
Uncharacterized protein n=81 Tax=Staphylococcus epidermidis RepID=Q5HRM0_STAEQ
Hypothetical protein DUF901, similar to C-terminal domain of ribosome protection-type Tc-resistance proteins
Uncharacterized protein {ECO:0000313|EMBL:AAW53564.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_059_011G1_scaffold_83_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9303..9878
DNA (576bp) protein (192aa)
Sigma-70 region 2 n=10 Tax=Staphylococcus epidermidis RepID=H0DPX7_STAEP
hypothetical protein
Sigma-70 region 2 {ECO:0000313|EMBL:EFE58346.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_059_011G1_scaffold_83_11

Not on your lists

10205..10390
DNA (186bp) protein (62aa)
Protein translocase subunit SecE n=79 Tax=Staphylococcus epidermidis RepID=SECE_STAEQ
Preprotein translocase subunit SecE (TC 3.A.5.1.1)
Preprotein translocase subunit SecE {ECO:0000313|EMBL:ETJ20435.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_059_011G1_scaffold_83_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10401..10949
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=57 Tax=Staphylococcus RepID=NUSG_STAEQ
Transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_059_011G1_scaffold_83_13
Staphylococcus haemolyticus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


11281..11703
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=71 Tax=Staphylococcus RepID=RL11_STAEQ
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=279808 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus haemolyticus (strain JCSC1435).;"
L2_059_011G1_scaffold_83_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


11916..12611
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=79 Tax=Staphylococcus epidermidis RepID=RL1_STAEQ
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_059_011G1_scaffold_83_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


12886..13386
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=79 Tax=Staphylococcus RepID=RL10_STAEQ
LSU ribosomal protein L10p (P0)
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L2_059_011G1_scaffold_83_16
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


13424..13792
DNA (369bp) protein (123aa)
50S ribosomal protein L7/L12 n=78 Tax=Staphylococcus epidermidis RepID=RL7_STAEQ
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L2_059_011G1_scaffold_83_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13858..14592
DNA (735bp) protein (245aa)
16S rRNA m(2)G 1207 methyltransferase (EC:2.1.1.-)
Methyltransferase small domain protein n=1 Tax=Staphylococcus epidermidis VCU144 RepID=F3SWG0_STAEP
Methyltransferase small domain protein {ECO:0000313|EMBL:EES36963.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_059_011G1_scaffold_83_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14808..18359
DNA (3552bp) protein (1184aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA-directed RNA polymerase beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=94 Tax=Staphylococcus RepID=RPOB_STAEQ
L2_059_011G1_scaffold_83_19
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18491..22114
DNA (3624bp) protein (1208aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=30 Tax=Staphylococcus RepID=RPOC_STAEQ
L2_059_011G1_scaffold_83_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22174..22332
DNA (159bp) protein (53aa)
Uncharacterized protein n=18 Tax=Staphylococcus epidermidis RepID=C5QUQ9_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EFE58357.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_059_011G1_scaffold_83_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22442..22702
DNA (261bp) protein (87aa)
30S ribosomal protein L7Ae, putative n=53 Tax=Staphylococcus epidermidis RepID=Q5HRK8_STAEQ
Firmicutes ribosomal L7Ae family protein
Uncharacterized protein {ECO:0000313|EMBL:EES36967.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_059_011G1_scaffold_83_22
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


22793..23017
DNA (225bp) protein (75aa)
30S ribosomal protein S12 n=5 Tax=Staphylococcus epidermidis RepID=F3SWF6_STAEP
SSU ribosomal protein S12p (S23e)
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Displaying 22 items

View Taxonomy