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L2_059_038G1_scaffold_313

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_038G1_scaffold_313_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(173..1558)
DNA (1386bp) protein (462aa)
Proline-specific permease n=4 Tax=Citrobacter RepID=J1FZI6_9ENTR
D-alanine/D-serine/glycine permease {ECO:0000313|EMBL:KJC06349.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
D-alanine/D-serine/glycine permease
L2_059_038G1_scaffold_313_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1836..2576)
DNA (741bp) protein (247aa)
UDP-N-acetyl-D-mannosaminuronic acid transferase {ECO:0000256|HAMAP-Rule:MF_01001, ECO:0000256|SAAS:SAAS00014171}; Short=UDP-ManNAcA transferase {ECO:0000256|HAMAP-Rule:MF_01001};; EC=2.4.1.180 {ECO:0000256|HAMAP-Rule:MF_01001, ECO:0000256|SAAS:SAAS00014176};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
UDP-N-acetyl-D-mannosaminuronic acid transferase n=7 Tax=Bacteria RepID=C1MG49_9ENTR
UDP-N-acetyl-D-mannosaminuronic acid transferase
L2_059_038G1_scaffold_313_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2576..3931)
DNA (1356bp) protein (452aa)
Putative ECA polymerase n=6 Tax=Citrobacter RepID=J1FZB5_9ENTR
Probable ECA polymerase {ECO:0000256|HAMAP-Rule:MF_01003, ECO:0000256|SAAS:SAAS00275810}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
common antigen polymerase
L2_059_038G1_scaffold_313_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3928..5007)
DNA (1080bp) protein (360aa)
TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151893}; EC=2.4.1.325 {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151892};; 4-alpha-L-fucosyltransferase {ECO:0000256|HAMAP-Rule:MF_01002}; TDP-Fuc4NAc:lipid II Fuc4NAc transferase {ECO:0000256|HAMAP-Rule:MF_01002}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
4-alpha-L-fucosyltransferase n=3 Tax=Citrobacter RepID=J0M1M3_9ENTR
4-alpha-L-fucosyltransferase
L2_059_038G1_scaffold_313_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5004..6254)
DNA (1251bp) protein (417aa)
Protein wzxE n=5 Tax=Citrobacter RepID=C1MG46_9ENTR
O-antigen translocase {ECO:0000313|EMBL:KJC06345.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
O-antigen translocase
L2_059_038G1_scaffold_313_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6256..7386)
DNA (1131bp) protein (377aa)
Lipopolysaccharide biosynthesis protein rffA n=1 Tax=Citrobacter sp. KTE30 RepID=R8UIS0_9ENTR
TDP-4-keto-6-deoxy-D-glucose transaminase family protein {ECO:0000313|EMBL:KEL77616.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
TDP-4-oxo-6-deoxy-D-glucose aminotransferase
L2_059_038G1_scaffold_313_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7391..8068)
DNA (678bp) protein (226aa)
TDP-fucosamine acetyltransferase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QNT0_CITFR
TDP-D-fucosamine acetyltransferase {ECO:0000313|EMBL:KEL77615.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
TDP-fucosamine acetyltransferase
L2_059_038G1_scaffold_313_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8065..9327)
DNA (1263bp) protein (421aa)
UDP-N-acetyl-D-mannosamine dehydrogenase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QWX8_CITFR
UDP-N-acetyl-D-mannosamine dehydrogenase {ECO:0000313|EMBL:KJC03937.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
wecC; UDP-N-acetyl-D-mannosamine dehydrogenase
L2_059_038G1_scaffold_313_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9324..10409)
DNA (1086bp) protein (362aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QJU3_CITFR
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ETX67703.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
UDP-N-acetylglucosamine 2-epimerase
L2_059_038G1_scaffold_313_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10510..11556)
DNA (1047bp) protein (349aa)
Lipopolysaccharide biosynthesis protein wzzE n=2 Tax=Citrobacter freundii RepID=G9SDK5_CITFR
Lipopolysaccharide biosynthesis protein wzzE {ECO:0000313|EMBL:ETX60964.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
lipopolysaccharide biosynthesis protein WzzE
L2_059_038G1_scaffold_313_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11569..12672)
DNA (1104bp) protein (368aa)
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase n=4 Tax=Citrobacter RepID=J1FZA4_9ENTR
UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:KJC03940.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase
L2_059_038G1_scaffold_313_12
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12911..14170)
DNA (1260bp) protein (420aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
Transcription termination factor Rho n=16 Tax=Enterobacteriaceae RepID=A8ACT5_CITK8
rho; transcription termination factor Rho
L2_059_038G1_scaffold_313_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14508..14837)
DNA (330bp) protein (110aa)
Thioredoxin n=1 Tax=Escherichia coli MS 21-1 RepID=D8ADY2_ECOLX
Thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
L2_059_038G1_scaffold_313_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14981..16174
DNA (1194bp) protein (398aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
ATP-dependent RNA helicase RhlB n=6 Tax=Citrobacter RepID=J1FZG9_9ENTR
ATP-dependent RNA helicase RhlB
L2_059_038G1_scaffold_313_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16311..17792
DNA (1482bp) protein (494aa)
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01550, ECO:0000256|SAAS:SAAS00181013}; EC=3.6.1.40 {ECO:0000256|HAMAP-Rule:MF_01550, ECO:0000256|SAAS:SAAS00181014};; Guanosine pentaphosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_01550}; pppGpp-5'-phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_01550}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
guanosine polyphosphate pyrophosphohydrolase (EC:3.6.1.40)
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase n=2 Tax=Citrobacter RepID=M3DRL0_CITFR
L2_059_038G1_scaffold_313_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17840..19861)
DNA (2022bp) protein (674aa)
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
ATP-dependent DNA helicase rep n=7 Tax=Citrobacter RepID=C1MG35_9ENTR
ATP-dependent DNA helicase Rep
L2_059_038G1_scaffold_313_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19946..20227
DNA (282bp) protein (94aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Peptidyl-prolyl cis-trans isomerase C n=10 Tax=Enterobacteriaceae RepID=C1MG34_9ENTR
peptidylprolyl isomerase
L2_059_038G1_scaffold_313_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20347..21822)
DNA (1476bp) protein (492aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00185580}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Ketol-acid reductoisomerase n=12 Tax=Enterobacteriaceae RepID=G8WD67_KLEOK
L2_059_038G1_scaffold_313_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21987..22889
DNA (903bp) protein (301aa)
HTH-type transcriptional activator ilvY n=2 Tax=Citrobacter RepID=C1MG32_9ENTR
HTH-type transcriptional regulator IlvY {ECO:0000313|EMBL:CDL38375.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
transcriptional regulator
L2_059_038G1_scaffold_313_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23062..24255
DNA (1194bp) protein (398aa)
Putative reductase P834_09144 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
trans-2-enoyl-CoA reductase (EC:1.3.1.-)
Putative reductase D186_19832 n=2 Tax=Citrobacter RepID=K8QMA3_CITFR
L2_059_038G1_scaffold_313_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24319..25863)
DNA (1545bp) protein (515aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Threonine dehydratase biosynthetic n=6 Tax=Citrobacter RepID=C1MG30_9ENTR
ilvA; threonine deaminase
L2_059_038G1_scaffold_313_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25869..27719)
DNA (1851bp) protein (617aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D3B0_CITFR
L2_059_038G1_scaffold_313_23
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27780..28709)
DNA (930bp) protein (310aa)
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:EFE07781.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EFE07781.1};; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
Branched-chain-amino-acid transaminase n=8 Tax=Enterobacteriaceae RepID=D4BE09_9ENTR
branched-chain amino acid aminotransferase
L2_059_038G1_scaffold_313_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28727..28990)
DNA (264bp) protein (88aa)
ilvM; acetolactate synthase 2 regulatory subunit (EC:2.2.1.6)
Acetolactate synthase isozyme 2 small subunit n=10 Tax=Citrobacter RepID=C1MG27_9ENTR
Acetolactate synthase isozyme 2 small subunit {ECO:0000313|EMBL:KDF03632.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
L2_059_038G1_scaffold_313_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28987..30633)
DNA (1647bp) protein (549aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
acetolactate synthase catalytic subunit (EC:2.2.1.6)
Acetolactate synthase n=3 Tax=Citrobacter RepID=K8QMA0_CITFR
L2_059_038G1_scaffold_313_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31146..32666
DNA (1521bp) protein (507aa)
Mg chelatase-like protein n=1 Tax=Citrobacter sp. KTE30 RepID=R8UIP9_9ENTR
ATP-dependent protease {ECO:0000313|EMBL:KJC06326.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ATP-dependent protease
L2_059_038G1_scaffold_313_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32691..33029)
DNA (339bp) protein (113aa)
UPF0438 protein yifE n=12 Tax=Enterobacteriaceae RepID=C1MG23_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10712.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_059_038G1_scaffold_313_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33148..33981
DNA (834bp) protein (278aa)
Transcriptional regulator HdfR n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QWW3_CITFR
Transcriptional regulator HdfR {ECO:0000313|EMBL:KJC06324.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
transcriptional regulator HdfR
Displaying 28 items

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