ggKbase home page

L2_059_052G1_scaffold_101

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_101_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

452..1750
DNA (1299bp) protein (433aa)
Alpha-ketoglutarate transporter n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QSD1_CITFR
Alpha-ketoglutarate transporter {ECO:0000313|EMBL:KJC04238.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
alpha-ketoglutarate transporter
L2_059_052G1_scaffold_101_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1747..2070)
DNA (324bp) protein (108aa)
Lipoprotein n=3 Tax=Citrobacter RepID=R8UUU2_9ENTR
Lipoprotein {ECO:0000313|EMBL:KJC04242.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
lipoprotein
L2_059_052G1_scaffold_101_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2115..3470)
DNA (1356bp) protein (452aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000850}; EC=2.7.8.8 {ECO:0000256|PIRNR:PIRNR000850};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
pssA; phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase n=5 Tax=Citrobacter RepID=K8R2B7_CITFR
L2_059_052G1_scaffold_101_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3503..6160)
DNA (2658bp) protein (886aa)
Protein lysine acetyltransferase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QTZ7_CITFR
Acetyltransferase family protein {ECO:0000313|EMBL:KEL78747.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
protein acetyltransferase
L2_059_052G1_scaffold_101_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6197..6895)
DNA (699bp) protein (233aa)
DTW domain-containing protein yfiP n=4 Tax=Citrobacter RepID=C1M8J6_9ENTR
DTW domain-containing protein YfiP {ECO:0000313|EMBL:KJC04235.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_101_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6965..7384)
DNA (420bp) protein (140aa)
Thioredoxin n=10 Tax=Enterobacteriaceae RepID=D4B6H2_9ENTR
thioredoxin 2
Thioredoxin {ECO:0000313|EMBL:EIQ79923.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
L2_059_052G1_scaffold_101_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7592..8671
DNA (1080bp) protein (360aa)
Rna methyltransferase n=5 Tax=Citrobacter RepID=J0VWQ7_9ENTR
Methyltransferase {ECO:0000313|EMBL:KJC04233.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
methyltransferase
L2_059_052G1_scaffold_101_8
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8705..9394)
DNA (690bp) protein (230aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=5 Tax=Citrobacter RepID=J0MAV0_9ENTR
L2_059_052G1_scaffold_101_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9712..10095
DNA (384bp) protein (128aa)
Autonomous glycyl radical cofactor n=9 Tax=Citrobacter RepID=C1M8J2_9ENTR
Autonomous glycyl radical cofactor {ECO:0000256|HAMAP-Rule:MF_00806, ECO:0000256|SAAS:SAAS00028662}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
autonomous glycyl radical cofactor GrcA
L2_059_052G1_scaffold_101_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10578..11192
DNA (615bp) protein (205aa)
LysR family transcriptional regulator n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QSD8_CITFR
Transcriptional regulator {ECO:0000313|EMBL:ETX69910.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
LysR family transcriptional regulator
L2_059_052G1_scaffold_101_11
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11210..12364)
DNA (1155bp) protein (385aa)
ATP-dependent RNA helicase SrmB {ECO:0000256|HAMAP-Rule:MF_00967}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00967};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
ATP-dependent RNA helicase SrmB n=5 Tax=Enterobacteriaceae RepID=I6HGN7_SHIFL
ATP-dependent RNA helicase SrmB
L2_059_052G1_scaffold_101_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..13257
DNA (738bp) protein (246aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=1 Tax=Citrobacter sp. KTE30 RepID=R8URK5_9ENTR
tRNA (adenine-N6)-methyltransferase
L2_059_052G1_scaffold_101_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13242..14864)
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=7 Tax=Citrobacter RepID=C1M8I7_9ENTR
L2_059_052G1_scaffold_101_14
Beauveria bassiana, Beauveria, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

15289..16419
DNA (1131bp) protein (377aa)
Sigma-E factor negative regulatory protein n=6 Tax=Citrobacter RepID=J1G852_9ENTR
Sigma-E factor regulatory protein rseB {ECO:0000313|EMBL:KGQ13668.1}; TaxID=1245745 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae; Beauveria.;" source="Beauveria bassiana D1-5.;"
rseA; anti-RNA polymerase sigma factor SigE
L2_059_052G1_scaffold_101_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16419..17375
DNA (957bp) protein (319aa)
Anti-sigma E factor n=3 Tax=Citrobacter RepID=M3DGG3_CITFR
Sigma-E factor regulatory protein rseB {ECO:0000313|EMBL:KEL78733.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
rseB; anti-sigma E factor
L2_059_052G1_scaffold_101_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17372..17836
DNA (465bp) protein (155aa)
SoxR reducing system protein RseC n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R2D1_CITFR
Sigma-E factor regulatory protein rseC {ECO:0000313|EMBL:KEL78732.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
SoxR reducing system protein RseC
L2_059_052G1_scaffold_101_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18107..19906
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Elongation factor 4 n=10 Tax=Citrobacter RepID=C1M8I2_9ENTR
elongation factor 4
L2_059_052G1_scaffold_101_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19922..20896
DNA (975bp) protein (325aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Signal peptidase I n=1 Tax=Citrobacter sp. KTE30 RepID=R8UQM3_9ENTR
signal peptidase I
L2_059_052G1_scaffold_101_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21166..21846
DNA (681bp) protein (227aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
Ribonuclease 3 n=11 Tax=Enterobacteriaceae RepID=C1M8I0_9ENTR
L2_059_052G1_scaffold_101_20
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21843..22748
DNA (906bp) protein (302aa)
GTPase Era n=10 Tax=Citrobacter RepID=C1M8H9_9ENTR
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
GTP-binding protein Era
L2_059_052G1_scaffold_101_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22776..23504
DNA (729bp) protein (243aa)
DNA repair protein RecO n=3 Tax=Citrobacter RepID=J0MAW1_9ENTR
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
recO; DNA repair protein RecO
L2_059_052G1_scaffold_101_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23516..24247
DNA (732bp) protein (244aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UPV0_9ENTR
pyridoxine 5'-phosphate synthase
L2_059_052G1_scaffold_101_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24247..24627
DNA (381bp) protein (127aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00102137}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00102157};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=7 Tax=Citrobacter RepID=C1M8H6_9ENTR
L2_059_052G1_scaffold_101_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24756..25016)
DNA (261bp) protein (87aa)
Uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C1M8H5_9ENTR
4Fe-4S cluster-containing protein {ECO:0000313|EMBL:ETX69895.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_059_052G1_scaffold_101_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25072..25920)
DNA (849bp) protein (283aa)
Transcriptional family protein n=5 Tax=Citrobacter RepID=J0VWS5_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:ETX69894.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
transcriptional regulator
L2_059_052G1_scaffold_101_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26038..26931
DNA (894bp) protein (298aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Citrobacter sp. KTE30 RepID=R8URJ5_9ENTR
murQ; N-acetylmuramic acid-6-phosphate etherase
L2_059_052G1_scaffold_101_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26941..28305
DNA (1365bp) protein (455aa)
N-acetylmuramic acid-specific PTS system EIIBC component n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QYN1_CITFR
PTS sugar transporter subunit IIC {ECO:0000313|EMBL:KJC07044.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
PTS sugar transporter subunit IIC
L2_059_052G1_scaffold_101_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28309..28944
DNA (636bp) protein (212aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=K8QSF7_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC07045.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_101_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29001..29498
DNA (498bp) protein (166aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
tRNA-specific adenosine deaminase n=7 Tax=Citrobacter RepID=C1M8H0_9ENTR
tRNA adenosine deaminase
L2_059_052G1_scaffold_101_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29511..31061)
DNA (1551bp) protein (517aa)
Membrane-bound lytic murein transglycosylase F {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00176609}; EC=4.2.2.n1 {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00166192};; Murein lyase F {ECO:0000256|HAMAP-Rule:MF_02016}; Flags: Precursor;; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Membrane-bound lytic murein transglycosylase F n=3 Tax=Citrobacter RepID=K8R2E6_CITFR
lytic murein transglycosylase
Displaying items 1-30 of 142 in total

View Taxonomy