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L2_059_052G1_scaffold_160

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_160_1
unknown

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2..73
DNA (72bp) protein (24aa)

This feature has no annotations

L2_059_052G1_scaffold_160_2
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(726..2003)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae RepID=K1N521_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:EXJ42822.1}; TaxID=1238222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus VPTS-2010.;"
hypothetical protein
L2_059_052G1_scaffold_160_3
unknown

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comp(2006..2389)
DNA (384bp) protein (128aa)

This feature has no annotations

L2_059_052G1_scaffold_160_4
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2399..3076)
DNA (678bp) protein (226aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1238222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus VPTS-2010.;"
Uncharacterized protein n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae RepID=K1M2R1_KLEPN
hemagglutinin associated protein
L2_059_052G1_scaffold_160_5
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3193..4479)
DNA (1287bp) protein (429aa)
Integrase n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae RepID=K1M7C2_KLEPN
Integrase {ECO:0000313|EMBL:EDX45152.1}; TaxID=439842 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188.;"
integrase
L2_059_052G1_scaffold_160_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4948..5967
DNA (1020bp) protein (340aa)
Zinc-binding dehydrogenase family protein n=3 Tax=Enterobacteriaceae RepID=I6F9W2_SHIFL
Alcohol dehydrogenase {ECO:0000313|EMBL:ETX71959.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
alcohol dehydrogenase
L2_059_052G1_scaffold_160_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6115..7617
DNA (1503bp) protein (501aa)
Uncharacterized protein n=2 Tax=Citrobacter freundii RepID=K8QQX5_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC13792.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_160_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7719..8801)
DNA (1083bp) protein (361aa)
Lipopolysaccharide export system permease lptG n=7 Tax=Citrobacter RepID=G9SEU8_CITFR
Lipopolysaccharide export system permease lptG {ECO:0000313|EMBL:ETX71957.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
lipopolysaccharide ABC transporter permease
L2_059_052G1_scaffold_160_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8801..9901)
DNA (1101bp) protein (367aa)
Lipopolysaccharide ABC transporter permease LptF n=3 Tax=Citrobacter RepID=K8QSF6_CITFR
Lipopolysaccharide ABC transporter permease {ECO:0000313|EMBL:KJC13655.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
lipopolysaccharide ABC transporter permease
L2_059_052G1_scaffold_160_10
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10168..11679
DNA (1512bp) protein (504aa)
Probable cytosol aminopeptidase n=10 Tax=Citrobacter RepID=C1MC10_9ENTR
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
leucyl aminopeptidase
L2_059_052G1_scaffold_160_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11796..12239
DNA (444bp) protein (148aa)
DNA polymerase III chi subunit {ECO:0000313|EMBL:CDL39761.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CDL39761.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
DNA polymerase III subunit chi n=7 Tax=Citrobacter RepID=J0M2E1_9ENTR
DNA polymerase III subunit chi
L2_059_052G1_scaffold_160_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12469..14016
DNA (1548bp) protein (516aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CID5_CITFR
L2_059_052G1_scaffold_160_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13991..14953
DNA (963bp) protein (321aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Valine--tRNA ligase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QQX1_CITFR
Valyl tRNA synthetase suspected. See adjacent gene [L2_059_052G1_scaffold_160_12].
valyl-tRNA synthase
L2_059_052G1_scaffold_160_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15173..15676
DNA (504bp) protein (168aa)
Acetyltransferase family protein n=6 Tax=Enterobacteriaceae RepID=I6F9X5_SHIFL
N-acetyltransferase GCN5 {ECO:0000313|EMBL:ETX71952.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
N-acetyltransferase GCN5
L2_059_052G1_scaffold_160_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15703..16533)
DNA (831bp) protein (277aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QSF2_CITFR
Putative type IIA topoisomerase {ECO:0000313|EMBL:KEL78879.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_059_052G1_scaffold_160_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16698..17456)
DNA (759bp) protein (253aa)
tRNA--hydroxylase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R0T9_CITFR
tRNA-family protein {ECO:0000313|EMBL:KEL78880.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
tRNA hydroxylase
L2_059_052G1_scaffold_160_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17508..17933)
DNA (426bp) protein (142aa)
Regulator of ribonuclease activity B n=7 Tax=Citrobacter RepID=C1MC04_9ENTR
Regulator of ribonuclease activity B {ECO:0000256|HAMAP-Rule:MF_01888}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
RNase E inhibitor protein
L2_059_052G1_scaffold_160_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18097..19101
DNA (1005bp) protein (335aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CIE1_CITFR
L2_059_052G1_scaffold_160_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19209..19661)
DNA (453bp) protein (151aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QX26_CITFR
Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:KJC13664.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
toxin-antitoxin biofilm protein TabA
L2_059_052G1_scaffold_160_20
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20334..21554
DNA (1221bp) protein (407aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
arginine deiminase (EC:3.5.3.6)
Arginine deiminase n=4 Tax=Enterobacteriaceae RepID=I6F9Y1_SHIFL
L2_059_052G1_scaffold_160_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21564..22496
DNA (933bp) protein (311aa)
carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DRM9_CITFR
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
L2_059_052G1_scaffold_160_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22554..23558
DNA (1005bp) protein (335aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=5 Tax=Citrobacter RepID=J0VNR0_9ENTR
L2_059_052G1_scaffold_160_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23614..25017
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QQW4_CITFR
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KJC07737.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
C4-dicarboxylate ABC transporter
L2_059_052G1_scaffold_160_24
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25162..25641
DNA (480bp) protein (160aa)
Arginine repressor n=6 Tax=Enterobacteriaceae RepID=I6F9Y5_SHIFL
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
ArgR family transcriptional regulator
L2_059_052G1_scaffold_160_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25740..25841
DNA (102bp) protein (34aa)
PyrBI operon leader peptide n=8 Tax=Citrobacter RepID=G9SEV9_CITFR
pyrBI operon leader peptide
PyrBI operon leader peptide {ECO:0000256|PIRNR:PIRNR003249}; PyrBI operon attenuator {ECO:0000256|PIRNR:PIRNR003249}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L2_059_052G1_scaffold_160_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25878..26813
DNA (936bp) protein (312aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Aspartate carbamoyltransferase n=8 Tax=Enterobacteriaceae RepID=G9SEW0_CITFR
aspartate carbamoyltransferase catalytic subunit
L2_059_052G1_scaffold_160_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26827..27288
DNA (462bp) protein (154aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain n=9 Tax=Enterobacteriaceae RepID=C1MBZ9_9ENTR
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
L2_059_052G1_scaffold_160_28
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27489..27875
DNA (387bp) protein (129aa)
Enamine/imine deaminase n=575 Tax=Enterobacteriaceae RepID=RIDA_SALTY
yjgF; conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELO88555.1}; TaxID=1029986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Enteritidis str. 50-5646.;"
L2_059_052G1_scaffold_160_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27967..29253)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QX20_CITFR
membrane protein
TRAP transporter, DctM subunit {ECO:0000313|EMBL:KEL78893.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
L2_059_052G1_scaffold_160_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29284..29793)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=C1MBZ5_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX65502.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
C4-dicarboxylate ABC transporter
Displaying items 1-30 of 68 in total

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