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L2_059_052G1_scaffold_372

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_372_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(94..453)
DNA (360bp) protein (120aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Citrobacter RepID=M3CG94_CITFR
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC08202.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
short-chain dehydrogenase
L2_059_052G1_scaffold_372_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(643..1854)
DNA (1212bp) protein (404aa)
Major facilitator superfamily transporter n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R608_CITFR
MFS transporter {ECO:0000313|EMBL:KJC08239.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
major facilitator superfamily transporter
L2_059_052G1_scaffold_372_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2020..2361
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D007_CITFR
Uncharacterized protein {ECO:0000313|EMBL:ETX72913.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_059_052G1_scaffold_372_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2423..4108)
DNA (1686bp) protein (562aa)
Putative transport protein WYG_0489 n=6 Tax=Citrobacter RepID=J0VVM4_9ENTR
Putative transport protein P834_05968 {ECO:0000256|HAMAP-Rule:MF_01015}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
transporter
L2_059_052G1_scaffold_372_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4378..4758
DNA (381bp) protein (127aa)
Inner membrane protein ybjM n=3 Tax=Citrobacter RepID=C1M9F2_9ENTR
Membrane protein {ECO:0000313|EMBL:KJC08198.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_372_6
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4793..5056)
DNA (264bp) protein (88aa)
Glutaredoxin, GrxA family n=7 Tax=Citrobacter RepID=D4BC11_9ENTR
Glutaredoxin, GrxA family {ECO:0000313|EMBL:EFE08629.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
glutaredoxin
L2_059_052G1_scaffold_372_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5229..5519
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=M3BH67_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC08196.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_372_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5503..6225
DNA (723bp) protein (241aa)
Nitroreductase A n=3 Tax=Citrobacter RepID=K8QTX9_CITFR
Nitroreductase A {ECO:0000313|EMBL:KJC08195.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
nitroreductase A
L2_059_052G1_scaffold_372_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6285..7187
DNA (903bp) protein (301aa)
Ribosomal protein S6--L-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_01552}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_01552};; Poly-alpha-glutamate synthase {ECO:0000256|HAMAP-Rule:MF_01552}; Ribosomal protein S6 modification protein {ECO:0000256|HAMAP-Rule:MF_01552}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Ribosomal protein S6 modification protein n=5 Tax=Citrobacter RepID=J1G704_9ENTR
ribosomal protein S6 modification protein
L2_059_052G1_scaffold_372_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7277..7753
DNA (477bp) protein (159aa)
Cytoplasmic protein n=6 Tax=Citrobacter RepID=J0VVM9_9ENTR
Putative sensory transduction regulator {ECO:0000313|EMBL:CDL37185.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
L2_059_052G1_scaffold_372_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8187..9299
DNA (1113bp) protein (371aa)
Putrescine-binding periplasmic protein n=5 Tax=Citrobacter RepID=J0M9Q3_9ENTR
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
spermidine/putrescine ABC transporter substrate-binding protein
L2_059_052G1_scaffold_372_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9438..10571
DNA (1134bp) protein (378aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Putrescine transport ATP-binding protein PotG n=3 Tax=Citrobacter RepID=J1G6U9_9ENTR
potG; putrescine transporter ATP-binding subunit
L2_059_052G1_scaffold_372_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10581..11534
DNA (954bp) protein (318aa)
Putrescine ABC transporter membrane protein n=5 Tax=Citrobacter RepID=J0M2Y6_9ENTR
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KJC08190.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
spermidine/putrescine ABC transporter permease
L2_059_052G1_scaffold_372_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11531..12376
DNA (846bp) protein (282aa)
Putrescine transport system permease potI n=6 Tax=Citrobacter RepID=J1G709_9ENTR
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:KEL82700.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
spermidine/putrescine ABC transporter permease
L2_059_052G1_scaffold_372_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12436..12924
DNA (489bp) protein (163aa)
Inner membrane protein ybjO n=8 Tax=Citrobacter RepID=C1M9G2_9ENTR
Inner membrane protein ybjO {ECO:0000313|EMBL:ETX72924.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
membrane protein
L2_059_052G1_scaffold_372_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12966..14093
DNA (1128bp) protein (376aa)
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC {ECO:0000256|HAMAP-Rule:MF_01012, ECO:0000256|SAAS:SAAS00055322}; EC=2.1.1.189 {ECO:0000256|HAMAP-Rule:MF_01012, ECO:0000256|SAAS:SAAS00055340};; 23S rRNA(m5U747)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01012}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CGA3_CITFR
rumB; 23S rRNA methyltransferase
L2_059_052G1_scaffold_372_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..15487)
DNA (678bp) protein (226aa)
Hydrolase, isochorismatase family n=5 Tax=Citrobacter RepID=J1G6V5_9ENTR
nicotinamidase
Nicotinamidase family protein YcaC {ECO:0000313|EMBL:CDL37196.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
L2_059_052G1_scaffold_372_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15504..16364)
DNA (861bp) protein (287aa)
Pirin-like protein n=2 Tax=Citrobacter RepID=M3BCU6_CITFR
Quercetin 2,3-dioxygenase {ECO:0000313|EMBL:KJC08725.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
quercetin 2,3-dioxygenase
L2_059_052G1_scaffold_372_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16473..17384
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=2 Tax=Citrobacter RepID=M3CC57_CITFR
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDL37198.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
LysR family transcriptional regulator
L2_059_052G1_scaffold_372_20
Pantoea vagans, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17464..17682)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=256 Tax=cellular organisms RepID=IF1_ENT38
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=712898 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)).;"
L2_059_052G1_scaffold_372_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17968..18672)
DNA (705bp) protein (235aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase n=5 Tax=Citrobacter RepID=J0M9R4_9ENTR
L2_059_052G1_scaffold_372_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18717..20438)
DNA (1722bp) protein (574aa)
Cysteine/glutathione ABC transporter membrane/ATP-binding component n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CVQ6_CITFR
Amino acid ABC transporter permease {ECO:0000313|EMBL:KJC08721.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
amino acid ABC transporter permease
L2_059_052G1_scaffold_372_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20439..22205)
DNA (1767bp) protein (589aa)
ATP-binding/permease CydD n=1 Tax=Citrobacter sp. KTE30 RepID=R8V3Y3_9ENTR
ATP-binding/permease CydD {ECO:0000313|EMBL:ETX70275.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
amino acid ABC transporter permease
L2_059_052G1_scaffold_372_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22320..23288)
DNA (969bp) protein (323aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Thioredoxin reductase n=4 Tax=Citrobacter RepID=K8QVQ8_CITFR
thioredoxin reductase
L2_059_052G1_scaffold_372_25
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23836..24330
DNA (495bp) protein (165aa)
Leucine-responsive regulatory protein n=28 Tax=Enterobacteriaceae RepID=LRP_KLEPN
lrp; Leucine-responsive regulatory protein
Leucine-responsive regulatory protein {ECO:0000313|EMBL:EKP26027.1}; TaxID=290336 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca M5al.;"
L2_059_052G1_scaffold_372_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24465..28526
DNA (4062bp) protein (1354aa)
DNA translocase FtsK n=2 Tax=Citrobacter RepID=K8R5Y7_CITFR
cell division protein FtsK
Cell division protein FtsK {ECO:0000313|EMBL:AHY12679.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_059_052G1_scaffold_372_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28638..29249
DNA (612bp) protein (204aa)
Outer-membrane lipoprotein carrier protein n=7 Tax=Citrobacter RepID=C1M9H7_9ENTR
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
lolA; lipoprotein chaperone
L2_059_052G1_scaffold_372_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29260..30603
DNA (1344bp) protein (448aa)
Replication-associated recombination protein A n=4 Tax=Citrobacter RepID=C1M9H8_9ENTR
Replication-associated recombination protein A {ECO:0000313|EMBL:KEL82685.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
recombination factor protein RarA
L2_059_052G1_scaffold_372_29
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30696..31988
DNA (1293bp) protein (431aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Serine--tRNA ligase n=3 Tax=Citrobacter RepID=J0VVP7_9ENTR
seryl-tRNA synthetase
L2_059_052G1_scaffold_372_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32225..32656
DNA (432bp) protein (144aa)
Anaerobic dimethyl sulfoxide reductase chain A {ECO:0000313|EMBL:CDL37217.1}; EC=1.8.99.- {ECO:0000313|EMBL:CDL37217.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Anaerobic dimethyl sulfoxide reductase n=3 Tax=Citrobacter RepID=J0M9S5_9ENTR
dimethyl sulfoxide reductase
Displaying items 1-30 of 38 in total

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