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L2_059_052G1_scaffold_394

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_394_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(549..1493)
DNA (945bp) protein (315aa)
Magnesium and cobalt transporter n=4 Tax=Clostridium butyricum RepID=B1R1R4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87836.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
corA; magnesium transport protein CorA
L2_059_052G1_scaffold_394_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1608..2774)
DNA (1167bp) protein (389aa)
abgB1; p-aminobenzoyl-glutamate hydrolase subunit B (EC:3.5.1.-)
Amidohydrolase n=2 Tax=Clostridium butyricum RepID=M8JF46_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84910.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L2_059_052G1_scaffold_394_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2980..3165
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8K1U0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30439.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L2_059_052G1_scaffold_394_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3271..3906
DNA (636bp) protein (212aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
tmk; thymidylate kinase Tmk (EC:2.7.4.9)
Thymidylate kinase n=2 Tax=Clostridium butyricum RepID=M8K9Z5_CLOBU
L2_059_052G1_scaffold_394_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4049..4381
DNA (333bp) protein (111aa)
Protein from nitrogen regulatory protein P-II n=4 Tax=Clostridium butyricum RepID=B1R1R0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP55589.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L2_059_052G1_scaffold_394_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4400..5332
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AE74_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87845.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
DNA polymerase III, gamma/tau subunit
L2_059_052G1_scaffold_394_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5336..6241
DNA (906bp) protein (302aa)
PSP1 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1Q8_CLOBU
Signal peptidase-like protein {ECO:0000313|EMBL:KJZ87847.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
PSP1 domain-containing protein
L2_059_052G1_scaffold_394_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6252..6455
DNA (204bp) protein (68aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1Q7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87853.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
copper chaperone
L2_059_052G1_scaffold_394_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6577..6747
DNA (171bp) protein (57aa)
Conserved domain protein n=4 Tax=Clostridium butyricum RepID=B1R1Q6_CLOBU
Ferredoxin {ECO:0000313|EMBL:ENZ30445.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
fdxA; 4Fe-4S ferredoxin FdxA
L2_059_052G1_scaffold_394_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6823..7467)
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1R1Q5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP55482.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
zinc-dependent hydrolase
L2_059_052G1_scaffold_394_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7748..8206
DNA (459bp) protein (153aa)
Transcriptional regulator CtsR n=4 Tax=Clostridium butyricum RepID=B1R1Q4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30447.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ctsR; transcriptional regulator CtsR
L2_059_052G1_scaffold_394_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8221..8805
DNA (585bp) protein (195aa)
McsA n=3 Tax=Clostridium butyricum RepID=B1R1Q3_CLOBU
UvrB/UvrC protein {ECO:0000313|EMBL:EEP55650.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L2_059_052G1_scaffold_394_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8786..9799
DNA (1014bp) protein (338aa)
Putative ATP:guanido phosphotransferase YacI {ECO:0000313|EMBL:KJZ87851.1}; EC=2.7.3.- {ECO:0000313|EMBL:KJZ87851.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative ATP:guanido phosphotransferase (EC:2.7.3.-)
Putative ATP:guanido phosphotransferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K1S8_CLOBU
L2_059_052G1_scaffold_394_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9824..12268
DNA (2445bp) protein (815aa)
Prolyl-tRNA synthetase {ECO:0000313|EMBL:KJZ84918.1}; EC=6.1.1.15 {ECO:0000313|EMBL:KJZ84918.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSN7_CLOBU
clpB1; chaperone protein ClpB
L2_059_052G1_scaffold_394_15
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12657..13592
DNA (936bp) protein (312aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
34.2 kDa protein in rubredoxin operon (EC:1.8.1.-)
Thioredoxin reductase n=2 Tax=Clostridium butyricum RepID=M8J674_CLOBU
L2_059_052G1_scaffold_394_16
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13595..13822
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JGF1_CLOBU
Glutaredoxin {ECO:0000313|EMBL:KJZ85630.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
L2_059_052G1_scaffold_394_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13885..14112)
DNA (228bp) protein (76aa)
Glutaredoxin-like protein, YruB-family n=4 Tax=Clostridium butyricum RepID=R0A1S4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84909.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
glutaredoxin-like protein, YruB-family
L2_059_052G1_scaffold_394_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14317..14484)
DNA (168bp) protein (56aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1P7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87837.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_059_052G1_scaffold_394_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14678..16054
DNA (1377bp) protein (459aa)
DNA repair protein radA n=4 Tax=Clostridium butyricum RepID=B1R1P6_CLOBU
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
radA; DNA repair protein RadA
L2_059_052G1_scaffold_394_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16272..17354
DNA (1083bp) protein (361aa)
DNA integrity scanning protein DisA n=5 Tax=Clostridium butyricum RepID=B1R1P5_CLOBU
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00207481}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
disA; DNA integrity scanning protein DisA
L2_059_052G1_scaffold_394_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17432..17833)
DNA (402bp) protein (134aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R1P4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30457.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L2_059_052G1_scaffold_394_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18094..19209
DNA (1116bp) protein (372aa)
Pin/tram domain protein n=4 Tax=Clostridium butyricum RepID=B1R1P3_CLOBU
Membrane-associated protein containing RNA-binding TRAM domain and ribonuclease PIN-domain, YacL {ECO:0000313|EMBL:KJZ87838.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
yacL; PIN and TRAM-domain containing protein YacL
L2_059_052G1_scaffold_394_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19236..19910
DNA (675bp) protein (225aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=4 Tax=Clostridium butyricum RepID=B1R1P2_CLOBU
L2_059_052G1_scaffold_394_24
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20357..22069
DNA (1713bp) protein (571aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
proS; proline--tRNA ligase ProS (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9X1_CLOBU
L2_059_052G1_scaffold_394_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22088..23488
DNA (1401bp) protein (467aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
cysS; cysteine--tRNA ligase CysS (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Clostridium butyricum RepID=M8J662_CLOBU
L2_059_052G1_scaffold_394_26
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23541..23954
DNA (414bp) protein (138aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Mini-ribonuclease 3 n=2 Tax=Clostridium butyricum RepID=M8JGD9_CLOBU
L2_059_052G1_scaffold_394_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23985..24818
DNA (834bp) protein (278aa)
23S rRNA (Guanosine-2'-O-)-methyltransferase rlmB {ECO:0000313|EMBL:KJZ87842.1}; EC=2.1.1.- {ECO:0000313|EMBL:KJZ87842.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Clostridium butyricum RepID=M8JF23_CLOBU
RNA methyltransferase
L2_059_052G1_scaffold_394_28
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24829..25341
DNA (513bp) protein (171aa)
Tetracycline resistance protein n=2 Tax=Clostridium butyricum RepID=M8K1R4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87855.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_059_052G1_scaffold_394_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25429..26049
DNA (621bp) protein (207aa)
RNA polymerase sigma-H factor n=3 Tax=Clostridium butyricum RepID=C4IF71_CLOBU
RNA polymerase sigma-H factor {ECO:0000313|EMBL:ETI92014.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
sigH; RNA polymerase sigma-H factor SigH
L2_059_052G1_scaffold_394_30
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26263..26358
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Bacteroides coprophilus DSM 18228 = JCM 13818 RepID=S0F5K3_9BACE
tufA2; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
Displaying 30 items

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