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L2_059_052G1_scaffold_477

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_052G1_scaffold_477_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(163..1353)
DNA (1191bp) protein (397aa)
HlyD family type I secretion membrane fusion protein n=6 Tax=Citrobacter RepID=C1MAA5_9ENTR
HlyD family type I secretion membrane fusion protein {ECO:0000313|EMBL:ETX69950.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
secretion protein HlyD
L2_059_052G1_scaffold_477_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1334..3520)
DNA (2187bp) protein (729aa)
Protein secretion abc efflux permease and atp-binding protein n=3 Tax=Citrobacter RepID=J0VIY9_9ENTR
ATP-binding protein {ECO:0000313|EMBL:KJC07280.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ATP-binding protein
L2_059_052G1_scaffold_477_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3517..4926)
DNA (1410bp) protein (470aa)
Contig0018, whole genome shotgun sequence n=2 Tax=Citrobacter RepID=M3CEH7_CITFR
Type I secretion outer membrane , TolC family protein {ECO:0000313|EMBL:KEL78391.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
type I secretion protein TolC
L2_059_052G1_scaffold_477_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5027..16237)
DNA (11211bp) protein (3737aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE30 RepID=R8UND5_9ENTR
Type I secretion C-terminal target domain protein {ECO:0000313|EMBL:KEL78390.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
large repetitive protein
L2_059_052G1_scaffold_477_5
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16821..17303)
DNA (483bp) protein (161aa)
SsrA-binding protein n=13 Tax=Enterobacteriaceae RepID=C1MAA1_9ENTR
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
smpB; SsrA-binding protein
L2_059_052G1_scaffold_477_6
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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17458..17901
DNA (444bp) protein (148aa)
Polyketide cyclase dehydrase and lipid transport family protein n=7 Tax=Citrobacter RepID=J1FVX2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EOQ47366.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
hypothetical protein
L2_059_052G1_scaffold_477_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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17885..18181
DNA (297bp) protein (99aa)
Protein RnfH 2 n=5 Tax=Enterobacteriaceae RepID=I6GYH4_SHIFL
UPF0125 protein P834_07805 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_059_052G1_scaffold_477_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18232..18576)
DNA (345bp) protein (115aa)
Outer membrane protein assembly factor BamE n=6 Tax=Enterobacteriaceae RepID=G9SAP5_CITFR
membrane biogenesis protein
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
L2_059_052G1_scaffold_477_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18726..20387)
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=1 Tax=Citrobacter freundii RepID=C1IG41_CITFR
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
recombination and repair protein
L2_059_052G1_scaffold_477_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20473..21351)
DNA (879bp) protein (293aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
ppnK; NAD(+) kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=6 Tax=Citrobacter RepID=J0LYA5_9ENTR
L2_059_052G1_scaffold_477_11
unknown

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21474..21644
DNA (171bp) protein (57aa)

This feature has no annotations

L2_059_052G1_scaffold_477_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21587..21997
DNA (411bp) protein (137aa)
Protein GrpE n=8 Tax=Citrobacter RepID=J1FVX8_9ENTR
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
heat shock protein GrpE
L2_059_052G1_scaffold_477_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22047..23336)
DNA (1290bp) protein (430aa)
UPF0053 inner membrane protein yfjD n=4 Tax=Citrobacter RepID=J0LS47_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KJC12995.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_059_052G1_scaffold_477_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23355..24146)
DNA (792bp) protein (264aa)
Inner membrane protein ypjD n=10 Tax=Citrobacter RepID=C1MA93_9ENTR
Inner membrane protein ypjD {ECO:0000313|EMBL:ETX69938.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
membrane protein
L2_059_052G1_scaffold_477_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24312..25673
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=8 Tax=Citrobacter RepID=C1MA92_9ENTR
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
signal recognition particle
L2_059_052G1_scaffold_477_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25927..26175
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=12 Tax=Enterobacteriaceae RepID=D4BHQ5_9ENTR
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L2_059_052G1_scaffold_477_17
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26194..26742
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=10 Tax=Citrobacter RepID=C1MA90_9ENTR
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
L2_059_052G1_scaffold_477_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26787..27554
DNA (768bp) protein (256aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
tRNA (guanine-N(1)-)-methyltransferase n=7 Tax=Citrobacter RepID=C1MA89_9ENTR
trmD; tRNA (guanine-N1)-methyltransferase
Displaying 18 items

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