ggKbase home page

L2_059_256G1_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_23_1
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..100)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R7J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF46694.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
L2_059_256G1_scaffold_23_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(174..371)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56993.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Aldo/keto reductases, related to diketogulonate reductase
L2_059_256G1_scaffold_23_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(443..742)
DNA (300bp) protein (100aa)
Diguanylate cyclase (GGDEF) domain n=2 Tax=Roseburia intestinalis RepID=D4KS31_9FIRM
diguanylate cyclase (GGDEF) domain
cGMP-specific phosphodiesterase {ECO:0000313|EMBL:CDA56992.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_23_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(803..1591)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS32_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09684.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_23_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1593..2447)
DNA (855bp) protein (285aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GHJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU98723.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_059_256G1_scaffold_23_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2530..3876)
DNA (1347bp) protein (449aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS34_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL09686.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_23_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3878..5761)
DNA (1884bp) protein (628aa)
Predicted ATP-dependent endonuclease of the OLD family n=2 Tax=Roseburia RepID=R6BUU2_9FIRM
Predicted ATP-dependent endonuclease of the OLD family {ECO:0000313|EMBL:CDA56987.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted ATP-dependent endonuclease of the OLD family
L2_059_256G1_scaffold_23_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6179..6760
DNA (582bp) protein (194aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GHJ7_9FIRM
Protein of unknown function (DUF1393).
Uncharacterized protein {ECO:0000313|EMBL:CDA56986.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_23_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7097..8578)
DNA (1482bp) protein (494aa)
NOL1/NOP2/sun family protein (Fragment) n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHJ9_9FIRM
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EEU98709.1}; Flags: Fragment;; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
tRNA and rRNA cytosine-C5-methylases
L2_059_256G1_scaffold_23_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8740..9831)
DNA (1092bp) protein (364aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU99572.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_059_256G1_scaffold_23_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9937..10071)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GF21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99571.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_059_256G1_scaffold_23_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10072..11250)
DNA (1179bp) protein (393aa)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (EC:2.6.1.-)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities {ECO:0000313|EMBL:CBL14205.1}; EC=2.6.1.- {ECO:0000313|EMBL:CBL14205.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L5_9FIRM
L2_059_256G1_scaffold_23_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11274..12758)
DNA (1485bp) protein (495aa)
Transporter, NhaC family (TC 2.A.35) n=2 Tax=Roseburia intestinalis RepID=D4L3L4_9FIRM
transporter, NhaC family (TC 2.A.35)
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EEU99569.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_059_256G1_scaffold_23_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12818..13195)
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP, putative n=2 Tax=Roseburia intestinalis RepID=D4L3L3_9FIRM
endoribonuclease L-PSP, putative
Endoribonuclease L-PSP, putative {ECO:0000313|EMBL:CBL14203.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_23_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13438..14121
DNA (684bp) protein (228aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Roseburia RepID=D4L3L2_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL14202.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_23_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14291..14434)
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GF16_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57642.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_23_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14470..14925)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B0D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57643.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_23_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14873..15121)
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GF14_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09693.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_23_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15114..17822)
DNA (2709bp) protein (903aa)
Small GTP-binding protein domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K8_9FIRM
small GTP-binding protein domain
Small GTP-binding protein domain {ECO:0000313|EMBL:CBL14198.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_23_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17878..18909)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57646.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_23_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18926..20317)
DNA (1392bp) protein (464aa)
Mg2+ transporter (MgtE) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K6_9FIRM
Mg2+ transporter (mgtE)
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_23_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20611..23106)
DNA (2496bp) protein (832aa)
Excinuclease ATPase subunit n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS45_9FIRM
Excinuclease ATPase subunit
Excinuclease ATPase subunit {ECO:0000313|EMBL:CBL09697.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_23_23
unknown

Not on your lists

23757..24179
DNA (423bp) protein (141aa)

This feature has no annotations

L2_059_256G1_scaffold_23_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23985..25688)
DNA (1704bp) protein (568aa)
Predicted ATPase of the ABC class n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K3_9FIRM
Predicted ATPase of the ABC class {ECO:0000313|EMBL:CBL14193.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Predicted ATPase of the ABC class
L2_059_256G1_scaffold_23_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25692..29048)
DNA (3357bp) protein (1119aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BAM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56131.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_23_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29023..29775)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS49_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09701.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_23_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29775..31238)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B528_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56129.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_23_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31350..32801)
DNA (1452bp) protein (484aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
putative nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GF02_9FIRM
L2_059_256G1_scaffold_23_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32845..34332)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GF01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99601.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATPase family associated with various cellular activities (AAA).
L2_059_256G1_scaffold_23_30

Not on your lists

comp(34409..34684)
DNA (276bp) protein (92aa)
Endoglucanase A n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYM0_9FIRM
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:ADD61809.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Endoglucanase
Displaying items 1-30 of 104 in total

View Taxonomy