ggKbase home page

L2_059_256G1_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_180_1

Not on your lists

2..331
DNA (330bp) protein (110aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=K6C365_9PORP
Uncultured bacterium plasmid pRGF00040 {ECO:0000313|EMBL:CDL67043.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase
L2_059_256G1_scaffold_180_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(440..1921)
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6RJ88_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS31298.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
transposase
L2_059_256G1_scaffold_180_3
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2185..4905)
DNA (2721bp) protein (907aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8V955_9BACE
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EIY21812.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L2_059_256G1_scaffold_180_4
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5135..6523
DNA (1389bp) protein (463aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9PYJ9_9BACE
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EIY21811.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
RNA methyltransferase
L2_059_256G1_scaffold_180_5
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6558..7478
DNA (921bp) protein (307aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Pseudouridine synthase n=3 Tax=Bacteroides RepID=A5ZDB4_9BACE
RNA pseudouridylate synthase
L2_059_256G1_scaffold_180_6
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7559..7957)
DNA (399bp) protein (133aa)
Uncharacterized protein n=4 Tax=root RepID=A5ZDB5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ73048.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L2_059_256G1_scaffold_180_7
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8070..9704
DNA (1635bp) protein (545aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9PZ66_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY21808.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Fe-S oxidoreductase
L2_059_256G1_scaffold_180_8
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9803..10657
DNA (855bp) protein (285aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8V952_9BACE
L2_059_256G1_scaffold_180_9
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10658..11890
DNA (1233bp) protein (411aa)
RmuC domain protein n=2 Tax=Bacteroides caccae RepID=A5ZDB8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY21806.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L2_059_256G1_scaffold_180_10
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12200..13873)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8V5U3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY21805.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
transcriptional regulator
L2_059_256G1_scaffold_180_11
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13926..14294)
DNA (369bp) protein (123aa)
Transcriptional regulator, BlaI/MecI/CopY family n=3 Tax=Bacteroides RepID=A5ZDC0_9BACE
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EDM22489.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
transcriptional regulator
L2_059_256G1_scaffold_180_12
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14491..15669)
DNA (1179bp) protein (393aa)
Transporter, CPA2 family n=2 Tax=Bacteroides caccae RepID=A5ZDC1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY21803.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
transporter, CPA2 family (2.A.37)
L2_059_256G1_scaffold_180_13
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15812..17593)
DNA (1782bp) protein (594aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
Elongation factor 4 n=3 Tax=Bacteroides RepID=A5ZDC2_9BACE
GTP-binding protein LepA
L2_059_256G1_scaffold_180_14
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17721..17921)
DNA (201bp) protein (67aa)
Uncharacterized protein n=22 Tax=Bacteroides RepID=A5ZDC3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY68486.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
hypothetical protein
L2_059_256G1_scaffold_180_15
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18075..18536)
DNA (462bp) protein (154aa)
Oxidoreductase n=2 Tax=Bacteroides caccae RepID=A5ZDC4_9BACE
Oxidoreductase {ECO:0000313|EMBL:EDM22493.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L2_059_256G1_scaffold_180_16
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18540..19313)
DNA (774bp) protein (258aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III (Xth) n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9ENG7_9BACE
Exodeoxyribonuclease III (Xth) {ECO:0000313|EMBL:EIY21799.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L2_059_256G1_scaffold_180_17
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19339..20592)
DNA (1254bp) protein (418aa)
Metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family n=2 Tax=Bacteroides caccae RepID=A5ZDC6_9BACE
Metal ion (Mn2+/Fe2+) transporter (Nramp) family metal ion transporter {ECO:0000313|EMBL:EIY21798.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Mn2+ and Fe2+ transporters of the NRAMP family
L2_059_256G1_scaffold_180_18
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20791..21036)
DNA (246bp) protein (82aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZDC7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM22496.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L2_059_256G1_scaffold_180_19
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21044..21784)
DNA (741bp) protein (247aa)
Probable transcriptional regulatory protein BACCAC_00884 n=3 Tax=Bacteroides RepID=A5ZDC8_9BACE
Probable transcriptional regulatory protein BN535_02728 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L2_059_256G1_scaffold_180_20
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(21816..24278)
DNA (2463bp) protein (821aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8V5T5_9BACE
L2_059_256G1_scaffold_180_21
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24612..26180)
DNA (1569bp) protein (523aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9ENG3_9BACE
Replicative DNA helicase {ECO:0000313|EMBL:EIY21794.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L2_059_256G1_scaffold_180_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26368..27198
DNA (831bp) protein (277aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Bacteroides RepID=I9PZ52_9BACE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L2_059_256G1_scaffold_180_23
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27896..28930)
DNA (1035bp) protein (345aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDM22501.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EDM22501.1};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=3 Tax=Bacteroides RepID=A5ZDD2_9BACE
L2_059_256G1_scaffold_180_24
Bacteroides sp. D1, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29153..29725)
DNA (573bp) protein (191aa)
Electron transport complex, RnfABCDGE type, A subunit n=14 Tax=Bacteroides RepID=D6D5H9_9BACE
electron transport complex, RnfABCDGE type, A subunit
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=556258 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D1.;"
L2_059_256G1_scaffold_180_25
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29748..30332)
DNA (585bp) protein (195aa)
Electron transport complex, RnfABCDGE type, E subunit n=3 Tax=Bacteroides RepID=A5ZDD4_9BACE
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
electron transport complex, RnfABCDGE type, E subunit
L2_059_256G1_scaffold_180_26
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30347..31084)
DNA (738bp) protein (246aa)
Electron transport complex, RnfABCDGE type, G subunit n=3 Tax=Bacteroides RepID=A5ZDD5_9BACE
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
electron transport complex, RnfABCDGE type, G subunit
L2_059_256G1_scaffold_180_27
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31081..32073)
DNA (993bp) protein (331aa)
Electron transport complex, RnfABCDGE type, D subunit n=3 Tax=Bacteroides RepID=A5ZDD6_9BACE
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfD
L2_059_256G1_scaffold_180_28
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32079..33416)
DNA (1338bp) protein (446aa)
Electron transport complex, RnfABCDGE type, C subunit n=3 Tax=Bacteroides RepID=A5ZDD7_9BACE
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
electron transport complex, RnfABCDGE type, C subunit
L2_059_256G1_scaffold_180_29
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33441..34343)
DNA (903bp) protein (301aa)
Ferredoxin n=3 Tax=Bacteroides RepID=A5ZDD8_9BACE
Electron transport complex rnfabcdge type B subunit {ECO:0000313|EMBL:CCZ73240.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
electron transport complex, RnfABCDGE type, B subunit
L2_059_256G1_scaffold_180_30
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34351..34776)
DNA (426bp) protein (142aa)
Positive regulator of sigma(E), RseC/MucC n=2 Tax=Bacteroides caccae RepID=A5ZDD9_9BACE
Positive regulator of sigma(E), RseC/MucC {ECO:0000313|EMBL:EDM22508.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
positive regulator of sigma(E), RseC/MucC
Displaying items 1-30 of 52 in total

View Taxonomy