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L2_059_256G1_scaffold_250

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_250_1
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(506..1789)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BH24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD65115.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
MFS transporter
L2_059_256G1_scaffold_250_2
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1758..2636)
DNA (879bp) protein (293aa)
Transcriptional regulator AraC family n=1 Tax=Clostridium sp. CAG:122 RepID=R5S5P5_9CLOT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ42296.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
AraC family transcriptional regulator
L2_059_256G1_scaffold_250_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2847..4823
DNA (1977bp) protein (659aa)
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EDS00098.1}; EC=3.2.1.- {ECO:0000313|EMBL:EDS00098.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Glycosyl hydrolase, family 31 n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQB9_9FIRM
hypothetical protein
L2_059_256G1_scaffold_250_4
unknown

Not on your lists

comp(4988..5416)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B479CC
L2_059_256G1_scaffold_250_5
unknown

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comp(5507..5698)
DNA (192bp) protein (64aa)

This feature has no annotations

L2_059_256G1_scaffold_250_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5655..6146)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E0J3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK91364.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_059_256G1_scaffold_250_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6580..8019)
DNA (1440bp) protein (480aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:CBL11002.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBL11002.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUG2_9FIRM
L2_059_256G1_scaffold_250_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8022..8972)
DNA (951bp) protein (317aa)
Uncharacterized domain HDIG n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNX5_9FIRM
uncharacterized domain HDIG
Uncharacterized domain HDIG {ECO:0000313|EMBL:CBL08577.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_250_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9034..10548)
DNA (1515bp) protein (505aa)
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUG5_9FIRM
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain {ECO:0000313|EMBL:CBL11005.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10922..13348
DNA (2427bp) protein (809aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Endonuclease MutS2 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNX3_9FIRM
MutS2 family protein
L2_059_256G1_scaffold_250_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13471..14175
DNA (705bp) protein (235aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUG8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL11008.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14172..15608
DNA (1437bp) protein (479aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Signal transduction histidine kinase n=2 Tax=Roseburia RepID=D4KNX1_9FIRM
Signal transduction histidine kinase
L2_059_256G1_scaffold_250_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15675..16175)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54292.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_250_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16627..16947)
DNA (321bp) protein (107aa)
Regulator of competence-specific genes n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNW9_9FIRM
Regulator of competence-specific genes
Regulator of competence-specific genes {ECO:0000313|EMBL:CBL08571.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_250_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16951..17304)
DNA (354bp) protein (118aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6AZR1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11012.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17376..17912)
DNA (537bp) protein (179aa)
Uncharacterized conserved protein n=2 Tax=Roseburia intestinalis RepID=D4KNW7_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL08569.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_250_17
unknown

Not on your lists

comp(17941..18147)
DNA (207bp) protein (69aa)

This feature has no annotations

L2_059_256G1_scaffold_250_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18196..18732)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=4 Tax=Roseburia RepID=D4KNW6_9FIRM
LSU ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_250_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19023..19982)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Roseburia RepID=C7GCX5_9FIRM
DNA-directed RNA polymerase subunit alpha
L2_059_256G1_scaffold_250_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20020..20613)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=4 Tax=Roseburia RepID=D4KNW5_9FIRM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_059_256G1_scaffold_250_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20633..21025)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=4 Tax=Roseburia RepID=D4KNW4_9FIRM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21128..21496)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=4 Tax=Roseburia RepID=D4KUH7_9FIRM
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_250_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22115..22333)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=5 Tax=Roseburia RepID=D4KNW2_9FIRM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_250_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22352..22615)
DNA (264bp) protein (88aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GCY1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54278.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_250_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22650..23447)
DNA (798bp) protein (266aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBL08562.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Methionine aminopeptidase n=2 Tax=Roseburia intestinalis RepID=D4KNW0_9FIRM
L2_059_256G1_scaffold_250_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23461..24105)
DNA (645bp) protein (215aa)
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Adenylate kinase n=3 Tax=Roseburia RepID=D4KNV9_9FIRM
L2_059_256G1_scaffold_250_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24313..25629)
DNA (1317bp) protein (439aa)
Protein translocase subunit SecY n=4 Tax=Roseburia RepID=D4KNV7_9FIRM
protein translocase subunit secY/sec61 alpha
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_250_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25629..26069)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=4 Tax=Roseburia RepID=D4KNV6_9FIRM
LSU ribosomal protein L15P
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26094..26279)
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=4 Tax=Roseburia RepID=D4KNV5_9FIRM
LSU ribosomal protein L30P
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_250_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26294..26803)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=3 Tax=Roseburia RepID=D4KNV4_9FIRM
SSU ribosomal protein S5P
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 70 in total

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