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L2_059_256G1_scaffold_255

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_255_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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252..1007
DNA (756bp) protein (252aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C6T5_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain
L2_059_256G1_scaffold_255_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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1000..1920
DNA (921bp) protein (307aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAM4_9FIRM
L2_059_256G1_scaffold_255_3
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1944..2282
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AMX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI61470.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L2_059_256G1_scaffold_255_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2316..3491
DNA (1176bp) protein (392aa)
putative phosphoglycerate mutase/acetyltransferase (EC:5.4.2.1)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C6T9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35707.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_059_256G1_scaffold_255_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3524..5521
DNA (1998bp) protein (666aa)
UPF0313 protein BACCAP_04157 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Z1_9FIRM
UPF0313 protein BACCAP_04157 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
UPF0313 protein
L2_059_256G1_scaffold_255_6
unknown

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5602..6765
DNA (1164bp) protein (388aa)

This feature has no annotations

L2_059_256G1_scaffold_255_7
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6826..8658)
DNA (1833bp) protein (611aa)
ATP-dependent DNA helicase, RecQ-like (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M8M3_9FIRM
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EOS67330.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L2_059_256G1_scaffold_255_8
unknown

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8777..8986
DNA (210bp) protein (70aa)

This feature has no annotations

L2_059_256G1_scaffold_255_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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9089..9730
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1V6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97626.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_059_256G1_scaffold_255_10
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10094..10447)
DNA (354bp) protein (118aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1V4_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM97624.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Predicted transcriptional regulators
L2_059_256G1_scaffold_255_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10595..10762
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HVM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41968.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L2_059_256G1_scaffold_255_12
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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10999..11712
DNA (714bp) protein (238aa)
LytTr DNA-binding domain protein n=2 Tax=Oscillibacter RepID=U2R578_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:ERK68336.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
response regulator
L2_059_256G1_scaffold_255_13
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11753..12562)
DNA (810bp) protein (270aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QM93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK68337.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
signal transduction histidine kinase regulating citrate/malate metabolism
L2_059_256G1_scaffold_255_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12544..13563)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QM93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK68337.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L2_059_256G1_scaffold_255_15

Not on your lists

13618..14493
DNA (876bp) protein (292aa)
Transposase n=1 Tax=gut metagenome RepID=J9G4L9_9ZZZZ
Transposase {ECO:0000313|EMBL:EJX02147.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
Integrase core domain.
L2_059_256G1_scaffold_255_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14648..14962
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75006.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ArsR family transcriptional regulator
L2_059_256G1_scaffold_255_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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15052..16053
DNA (1002bp) protein (334aa)
Putative permease n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRX7_9FIRM
Putative permease {ECO:0000313|EMBL:EDN01015.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Predicted permeases
L2_059_256G1_scaffold_255_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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16073..16420
DNA (348bp) protein (116aa)
Redox-active disulfide protein 2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB91_9FIRM
Redox-active disulfide protein 2 {ECO:0000313|EMBL:EGJ47619.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
small redox-active disulfide protein 2
L2_059_256G1_scaffold_255_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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16423..16845
DNA (423bp) protein (141aa)
Protein-tyrosine-phosphatase (EC:1.20.4.1)
Arsenate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB92_9FIRM
Arsenate reductase {ECO:0000313|EMBL:EGJ47620.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_059_256G1_scaffold_255_20
unknown

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17300..17500
DNA (201bp) protein (67aa)

This feature has no annotations

L2_059_256G1_scaffold_255_21
unknown

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17585..17785
DNA (201bp) protein (67aa)

This feature has no annotations

L2_059_256G1_scaffold_255_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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18370..20133
DNA (1764bp) protein (588aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EDN00381.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EDN00381.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
dnaX; DNA polymerase III gamma/tau subunit (EC:2.7.7.7)
DNA polymerase III, subunit gamma and tau n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU34_9FIRM
L2_059_256G1_scaffold_255_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20179..20526
DNA (348bp) protein (116aa)
Nucleoid-associated protein BACCAP_01713 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU33_9FIRM
Nucleoid-associated protein BACCAP_01713 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_059_256G1_scaffold_255_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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20647..21366
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YSQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56558.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_059_256G1_scaffold_255_25
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21369..22496
DNA (1128bp) protein (376aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F902_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDE10197.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
4Fe-4S ferredoxin, iron-sulfur binding
L2_059_256G1_scaffold_255_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22598..23245
DNA (648bp) protein (216aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=3 Tax=Clostridiales RepID=G9YSQ9_9FIRM
L2_059_256G1_scaffold_255_27
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23474..24658
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000364B5F8
basic membrane lipoprotein
Tax=BJP_IG2103_Clostridiales_50_15
L2_059_256G1_scaffold_255_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24820..26349
DNA (1530bp) protein (510aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RV70_9FIRM
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF38263.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC transporter-like protein
L2_059_256G1_scaffold_255_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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26350..27525
DNA (1176bp) protein (392aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RV69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL68106.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
inner-membrane translocator
L2_059_256G1_scaffold_255_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27522..28487
DNA (966bp) protein (322aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RV68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL68105.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
inner-membrane translocator
Displaying items 1-30 of 47 in total

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