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L2_059_256G1_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_258_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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235..777
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78480.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized protein conserved in cyanobacteria
L2_059_256G1_scaffold_258_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

903..1766
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78481.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_3
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1905..2195
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B69DA6
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR03552.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
hypothetical protein
L2_059_256G1_scaffold_258_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2339..2998
DNA (660bp) protein (220aa)
Transcriptional regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCI4_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCZ78482.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcriptional regulator
L2_059_256G1_scaffold_258_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3228..5195
DNA (1968bp) protein (656aa)
Myosin-crossreactive antigen n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPG6_9FIRM
Myosin-crossreactive antigen {ECO:0000313|EMBL:CCZ77669.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Myosin-crossreactive antigen
L2_059_256G1_scaffold_258_6
unknown

Not on your lists

comp(5247..5435)
DNA (189bp) protein (63aa)

This feature has no annotations

L2_059_256G1_scaffold_258_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5547..6824)
DNA (1278bp) protein (426aa)
Signal transduction histidine kinase regulating citrate/malate metabolism n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHD0_9FIRM
Signal transduction histidine kinase regulating citrate/malate metabolism {ECO:0000313|EMBL:CCZ77668.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6827..7540)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77667.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7616..7873)
DNA (258bp) protein (86aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU48_9FIRM
L2_059_256G1_scaffold_258_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7893..8777)
DNA (885bp) protein (295aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMD5_9FIRM
L2_059_256G1_scaffold_258_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8859..9686)
DNA (828bp) protein (276aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6Z6_9FIRM
L2_059_256G1_scaffold_258_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9683..10561)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VER8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79237.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10876..11166
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULQ5_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
30S ribosomal protein S6
L2_059_256G1_scaffold_258_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11188..11631
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU53_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
single-strand binding protein
L2_059_256G1_scaffold_258_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11673..11930
DNA (258bp) protein (86aa)
30S ribosomal protein S18 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UME0_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rpsR; 30S ribosomal protein S18
L2_059_256G1_scaffold_258_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12234..13541
DNA (1308bp) protein (436aa)
Putative ATP/GTP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V702_9FIRM
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:CCZ79241.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative ATP/GTP-binding protein
L2_059_256G1_scaffold_258_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13654..13986)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VES3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79242.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Thermophilic glucose-6-phosphate isomerase and related metalloenzymes
L2_059_256G1_scaffold_258_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14056..15474)
DNA (1419bp) protein (473aa)
ansB1; aspartate ammonia-lyase AnsB (EC:4.3.1.1)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79243.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_059_256G1_scaffold_258_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15808..16296
DNA (489bp) protein (163aa)
Transcriptional regulator AsnC family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UU57_9FIRM
Transcriptional regulator AsnC family {ECO:0000313|EMBL:CCZ79244.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcriptional regulator
L2_059_256G1_scaffold_258_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16374..16679
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UME3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79245.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted nucleotidyltransferases
L2_059_256G1_scaffold_258_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16651..17073
DNA (423bp) protein (141aa)
Nucleotidyltransferase substrate binding protein, HI0074 family n=1 Tax=Eubacterium rectale M104/1 RepID=D4JK33_9FIRM
nucleotidyltransferase substrate binding protein, HI0074 family
Nucleotidyltransferase substrate binding protein, HI0074 family {ECO:0000313|EMBL:CBK93980.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L2_059_256G1_scaffold_258_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17070..17372
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VES8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79247.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17442..18188
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UMH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79478.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_059_256G1_scaffold_258_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18240..19229
DNA (990bp) protein (330aa)
RelA/SpoT domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFI7_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:CCZ79477.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RelA/SpoT domain containing protein
L2_059_256G1_scaffold_258_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19387..20061)
DNA (675bp) protein (225aa)
Putative transcription regulator protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V7R4_9FIRM
Putative transcription regulator protein {ECO:0000313|EMBL:CCZ79476.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted transcriptional regulators
L2_059_256G1_scaffold_258_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20275..20637
DNA (363bp) protein (121aa)
Putative BlaI family transcriptional regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN21_9FIRM
Putative BlaI family transcriptional regulator {ECO:0000313|EMBL:CCZ79475.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcriptional regulator
L2_059_256G1_scaffold_258_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20647..22473
DNA (1827bp) protein (609aa)
Peptidase M56 family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UUT4_9FIRM
Peptidase M56 family protein {ECO:0000313|EMBL:CCZ79474.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidase M56 family protein
L2_059_256G1_scaffold_258_28
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23076..24302
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBF3_9FIRM
L2_059_256G1_scaffold_258_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24568..25143
DNA (576bp) protein (192aa)
Putative manganese efflux pump MntP n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT85_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L2_059_256G1_scaffold_258_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25174..26160
DNA (987bp) protein (329aa)
K+-dependent Na+/Ca+ exchanger related-protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKU8_9FIRM
K+-dependent Na+/Ca+ exchanger related-protein {ECO:0000313|EMBL:CCZ78908.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
K+-dependent Na+/Ca+ exchanger related-protein
Displaying items 1-30 of 68 in total

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