ggKbase home page

L2_059_256G1_scaffold_284

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_284_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(157..1203)
DNA (1047bp) protein (349aa)
Uncharacterized conserved protein n=2 Tax=Roseburia intestinalis RepID=D4KTB6_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL10118.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1429..1656)
DNA (228bp) protein (76aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GCM4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10117.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1657..1839)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KTB4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10116.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1987..2865)
DNA (879bp) protein (293aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GCM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA53915.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_284_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2967..4001)
DNA (1035bp) protein (345aa)
HD domain protein n=2 Tax=Roseburia RepID=C7GCM1_9FIRM
Putative HD domain protein {ECO:0000313|EMBL:CDA56105.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
HD-GYP domain
L2_059_256G1_scaffold_284_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4029..4550)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B507_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13329.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_284_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4598..5524)
DNA (927bp) protein (309aa)
ParB-like partition proteins n=2 Tax=Roseburia RepID=D4KTB1_9FIRM
ParB-like partition proteins
ParB-like partition proteins {ECO:0000313|EMBL:CBL10113.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5517..6284)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Roseburia RepID=C7GCL8_9FIRM
Sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:CDA56102.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ATPases involved in chromosome partitioning
L2_059_256G1_scaffold_284_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8013..8654)
DNA (642bp) protein (214aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Roseburia RepID=D4KTA9_9FIRM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:CDA56099.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_284_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8670..9674)
DNA (1005bp) protein (335aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase n=2 Tax=Roseburia RepID=D4KZW9_9FIRM
L2_059_256G1_scaffold_284_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9849..10820
DNA (972bp) protein (324aa)
Hydrolase alpha/beta fold family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BS49_9FIRM
Hydrolase alpha/beta fold family {ECO:0000313|EMBL:CDA56097.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_284_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11000..11716)
DNA (717bp) protein (239aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal RNA small subunit methyltransferase G n=4 Tax=Roseburia RepID=D4KZX0_9FIRM
L2_059_256G1_scaffold_284_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11823..13796)
DNA (1974bp) protein (658aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZX1_9FIRM
glucose-inhibited division protein A
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_284_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13846..15219)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
tRNA modification GTPase MnmE n=2 Tax=Roseburia RepID=D4KZX2_9FIRM
tRNA modification GTPase trmE
L2_059_256G1_scaffold_284_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15316..15942)
DNA (627bp) protein (209aa)
Predicted RNA-binding protein n=4 Tax=Roseburia RepID=D4KTA3_9FIRM
Predicted RNA-binding protein
Predicted RNA-binding protein {ECO:0000313|EMBL:CDA56092.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_284_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15965..17266)
DNA (1302bp) protein (434aa)
Membrane protein insertase YidC/Oxa1 family C-terminal domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BAJ8_9FIRM
Membrane protein insertase YidC/Oxa1 family C-terminal domain {ECO:0000313|EMBL:CDA56091.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L2_059_256G1_scaffold_284_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17520..17858)
DNA (339bp) protein (113aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Ribonuclease P protein component n=4 Tax=Roseburia RepID=D4KTA2_9FIRM
L2_059_256G1_scaffold_284_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18793..20208
DNA (1416bp) protein (472aa)
Chromosomal replication initiator protein DnaA n=4 Tax=Roseburia RepID=D4KTA0_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chromosomal replication initiator protein DnaA
L2_059_256G1_scaffold_284_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20546..21658
DNA (1113bp) protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=2 Tax=Roseburia RepID=C7GCK5_9FIRM
L2_059_256G1_scaffold_284_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21722..21937
DNA (216bp) protein (72aa)
S4 domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCK4_9FIRM
S4 domain protein {ECO:0000313|EMBL:EEV00441.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_059_256G1_scaffold_284_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21934..23040
DNA (1107bp) protein (369aa)
DNA replication and repair protein RecF n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KT97_9FIRM
recF protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23045..24982
DNA (1938bp) protein (646aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
DNA gyrase subunit B n=3 Tax=Roseburia intestinalis RepID=D4KT96_9FIRM
L2_059_256G1_scaffold_284_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25072..27696
DNA (2625bp) protein (875aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=4 Tax=Roseburia RepID=D4KT95_9FIRM
L2_059_256G1_scaffold_284_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27730..28830
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B4Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56079.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_059_256G1_scaffold_284_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29053..29781
DNA (729bp) protein (243aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GCJ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10095.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29778..31391
DNA (1614bp) protein (538aa)
ABC-type multidrug transport system, ATPase and permease components n=3 Tax=Roseburia intestinalis RepID=D4KT92_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL10094.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_284_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31526..31969
DNA (444bp) protein (148aa)
Response regulator of the LytR/AlgR family n=4 Tax=Roseburia RepID=D4KT90_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDA57550.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_284_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32024..32482
DNA (459bp) protein (153aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GCJ5_9FIRM
Protein of unknown function (DUF3021).
Uncharacterized protein {ECO:0000313|EMBL:CDA57549.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_284_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32625..35492
DNA (2868bp) protein (956aa)
exo-1,4-beta-glucosidase (EC:3.2.1.74 3.2.1.21)
Exo-1,4-beta-glucosidase {ECO:0000313|EMBL:CBL12929.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CBL12929.1};; EC=3.2.1.74 {ECO:0000313|EMBL:CBL12929.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Exo-1,4-beta-glucosidase n=3 Tax=Roseburia intestinalis RepID=D4KT88_9FIRM
L2_059_256G1_scaffold_284_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35748..36602
DNA (855bp) protein (285aa)
Uncharacterized conserved protein n=3 Tax=Roseburia intestinalis RepID=D4KT87_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL10089.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 37 in total

View Taxonomy