ggKbase home page

L2_059_256G1_scaffold_344

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_344_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..840)
DNA (840bp) protein (280aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXF8_9FIRM
L2_059_256G1_scaffold_344_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(907..1860)
DNA (954bp) protein (318aa)
Exopolyphosphatase-related proteins n=3 Tax=Roseburia intestinalis RepID=D4KWE0_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBL09184.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_344_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1899..2279)
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=4 Tax=Roseburia RepID=D4KQN1_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_344_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2291..5251)
DNA (2961bp) protein (987aa)
Translation initiation factor IF-2 n=2 Tax=Roseburia RepID=D4KWD8_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
bacterial translation initiation factor 2 (bIF-2)
L2_059_256G1_scaffold_344_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5257..5589)
DNA (333bp) protein (111aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=3 Tax=Roseburia RepID=D4KWD7_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:CDA55709.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Ribosomal protein HS6-type (S12/L30/L7a)
L2_059_256G1_scaffold_344_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5576..5866)
DNA (291bp) protein (97aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWD6_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CBL11676.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_344_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5882..7105)
DNA (1224bp) protein (408aa)
Transcription termination factor NusA n=2 Tax=Roseburia RepID=C7GDL0_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transcription termination factor NusA
L2_059_256G1_scaffold_344_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7226..7693)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=4 Tax=Roseburia RepID=D4KQM8_9FIRM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8381..9466)
DNA (1086bp) protein (362aa)
Dioxygenases related to 2-nitropropane dioxygenase n=2 Tax=Roseburia RepID=D4KQM6_9FIRM
Dioxygenases related to 2-nitropropane dioxygenase
Dioxygenases related to 2-nitropropane dioxygenase {ECO:0000313|EMBL:CDA55720.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9724..10740)
DNA (1017bp) protein (339aa)
UDP-glucose-4-epimerase (EC:5.1.3.2)
UDP-glucose-4-epimerase {ECO:0000313|EMBL:CBL09177.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CBL09177.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
UDP-glucose-4-epimerase n=3 Tax=Roseburia RepID=D4KQM5_9FIRM
L2_059_256G1_scaffold_344_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10973..11806
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=3 Tax=Roseburia intestinalis RepID=D4KQM4_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBL09176.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_344_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11803..12525)
DNA (723bp) protein (241aa)
Histidinol phosphatase and related hydrolases of the PHP family n=2 Tax=Roseburia RepID=D4KWC7_9FIRM
Histidinol phosphatase and related hydrolases of the PHP family
Histidinol phosphatase and related hydrolases of the PHP family {ECO:0000313|EMBL:CBL11667.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_344_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12618..12974)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=4 Tax=Roseburia RepID=D4KQM2_9FIRM
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_059_256G1_scaffold_344_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13000..13197)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=4 Tax=Roseburia RepID=D4KQM1_9FIRM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_344_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13217..13714)
DNA (498bp) protein (166aa)
Translation initiation factor IF-3 n=4 Tax=Roseburia RepID=D4KQM0_9FIRM
bacterial translation initiation factor 3 (bIF-3)
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14028..15728)
DNA (1701bp) protein (567aa)
Methyl-accepting chemotaxis protein signaling domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFZ6_9FIRM
Methyl-accepting chemotaxis protein signaling domain protein {ECO:0000313|EMBL:EEU99252.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methyl-accepting chemotaxis protein
L2_059_256G1_scaffold_344_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15770..16213)
DNA (444bp) protein (148aa)
Chemotaxis signal transduction protein n=4 Tax=Roseburia RepID=D4KWC2_9FIRM
Chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:CDA55728.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16411..17280
DNA (870bp) protein (290aa)
Predicted metal-dependent phosphoesterases (PHP family) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWC1_9FIRM
Predicted metal-dependent phosphoesterases (PHP family)
Predicted metal-dependent phosphoesterases (PHP family) {ECO:0000313|EMBL:CBL11661.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_059_256G1_scaffold_344_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17313..18125)
DNA (813bp) protein (271aa)
HAD-superfamily hydrolase, subfamily IIB n=3 Tax=Roseburia RepID=D4KQL6_9FIRM
HAD-superfamily hydrolase, subfamily IIB
HAD-superfamily hydrolase subfamily IIB {ECO:0000313|EMBL:CDA55730.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18158..20296)
DNA (2139bp) protein (713aa)
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Polyphosphate kinase n=4 Tax=Roseburia RepID=D4KQL5_9FIRM
L2_059_256G1_scaffold_344_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20309..21841)
DNA (1533bp) protein (511aa)
Exopolyphosphatase n=4 Tax=Roseburia RepID=D4KQL4_9FIRM
Exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:CDA55732.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21871..23166)
DNA (1296bp) protein (432aa)
ATPase with chaperone activity ATP-binding domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV09_9FIRM
ATPase with chaperone activity ATP-binding domain {ECO:0000313|EMBL:CDA55733.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted ATPase (AAA+ superfamily)
L2_059_256G1_scaffold_344_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23220..24350)
DNA (1131bp) protein (377aa)
Prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=4 Tax=Roseburia RepID=D4KQL2_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDA55734.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_059_256G1_scaffold_344_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24542..25573
DNA (1032bp) protein (344aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6AXH9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09163.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_059_256G1_scaffold_344_25
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25648..30162)
DNA (4515bp) protein (1505aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA polymerase III polC-type n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HL93_9FIRM
DNA polymerase III subunit alpha
L2_059_256G1_scaffold_344_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30227..31276)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B5D0_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L2_059_256G1_scaffold_344_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31290..32321)
DNA (1032bp) protein (344aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
RIP metalloprotease RseP n=3 Tax=Roseburia intestinalis RepID=D4KQK8_9FIRM
RIP metalloprotease RseP
L2_059_256G1_scaffold_344_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32350..33495)
DNA (1146bp) protein (382aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=3 Tax=Roseburia intestinalis RepID=D4KQK7_9FIRM
L2_059_256G1_scaffold_344_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33664..34470)
DNA (807bp) protein (269aa)
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:CBL11650.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphatidate cytidylyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWB0_9FIRM
L2_059_256G1_scaffold_344_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34501..35292)
DNA (792bp) protein (264aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=4 Tax=Roseburia RepID=D4KWA9_9FIRM
Displaying items 1-30 of 37 in total

View Taxonomy