ggKbase home page

L2_059_256G1_scaffold_389

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_389_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

206..2563
DNA (2358bp) protein (786aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76978.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DEAD_2.
L2_059_256G1_scaffold_389_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2689..4182
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80554.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Beta-lactamase class A
L2_059_256G1_scaffold_389_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4364..5638
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76976.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Glycerol dehydrogenase and related enzymes
L2_059_256G1_scaffold_389_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5641..6123
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Ruminococcus RepID=C6JCS6_9FIRM
L2_059_256G1_scaffold_389_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6151..7560
DNA (1410bp) protein (470aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CSD5_9FIRM
L2_059_256G1_scaffold_389_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7545..8024
DNA (480bp) protein (160aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Mini-ribonuclease 3 n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQM9_9FIRM
hypothetical protein
L2_059_256G1_scaffold_389_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8021..8758
DNA (738bp) protein (246aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F32C22
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EES76972.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_059_256G1_scaffold_389_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8877..9476
DNA (600bp) protein (200aa)
RNA polymerase sigma-H factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCS1_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EES76970.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
RNA polymerase, sigma 30 subunit, SigH
L2_059_256G1_scaffold_389_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10149..11819
DNA (1671bp) protein (557aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=2 Tax=Ruminococcus RepID=C6JCR9_9FIRM
L2_059_256G1_scaffold_389_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11929..12333)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80564.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_059_256G1_scaffold_389_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12553..13146
DNA (594bp) protein (198aa)
Maf-like protein RSAG_01734 n=2 Tax=Ruminococcus RepID=C6JCR7_9FIRM
Maf-like protein BN806_00891 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
MAF protein
L2_059_256G1_scaffold_389_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13153..13818
DNA (666bp) protein (222aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Phosphoglycolate phosphatase, bacterial n=2 Tax=Ruminococcus RepID=C6JCR6_9FIRM
Phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EES76965.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_059_256G1_scaffold_389_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13811..14614
DNA (804bp) protein (268aa)
Cof-like hydrolase n=2 Tax=Ruminococcus RepID=C6JCR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80567.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
HAD-superfamily hydrolase, subfamily IIB
L2_059_256G1_scaffold_389_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14616..14873
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76963.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_059_256G1_scaffold_389_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15196..17853
DNA (2658bp) protein (886aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76962.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_059_256G1_scaffold_389_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18122..20194
DNA (2073bp) protein (691aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80573.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Molecular chaperone, HSP90 family
L2_059_256G1_scaffold_389_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20548..20877
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCR1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80575.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Sporulation initiation factor Spo0A C terminal.
L2_059_256G1_scaffold_389_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20891..21391)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80577.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_059_256G1_scaffold_389_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21646..22485
DNA (840bp) protein (280aa)
DegV family EDD domain-containing protein n=2 Tax=Ruminococcus RepID=C6JCQ9_9FIRM
DegV family EDD domain-containing protein {ECO:0000313|EMBL:EES76958.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
EDD domain protein, DegV family
L2_059_256G1_scaffold_389_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22560..23033
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80581.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_059_256G1_scaffold_389_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23166..23366)
DNA (201bp) protein (67aa)
Cold shock-like protein CspLA n=3 Tax=Ruminococcus RepID=C6JCQ7_9FIRM
Cold shock-like protein CspLA {ECO:0000313|EMBL:EES76956.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
cold-shock DNA-binding protein family
L2_059_256G1_scaffold_389_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23641..24927
DNA (1287bp) protein (429aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCQ6_9FIRM
L2_059_256G1_scaffold_389_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24961..25887
DNA (927bp) protein (309aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=2 Tax=Ruminococcus RepID=C6JCQ5_9FIRM
L2_059_256G1_scaffold_389_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25898..26686
DNA (789bp) protein (263aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=2 Tax=Ruminococcus RepID=C6JCQ4_9FIRM
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L2_059_256G1_scaffold_389_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26686..27588
DNA (903bp) protein (301aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
dihydroorotate dehydrogenase (subfamily 1) family protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=2 Tax=Ruminococcus RepID=C6JCQ3_9FIRM
L2_059_256G1_scaffold_389_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27615..28295
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=3 Tax=root RepID=C6JCQ2_9FIRM
L2_059_256G1_scaffold_389_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28374..28526
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77171.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_059_256G1_scaffold_389_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28552..29025
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77172.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
VanZ family protein
L2_059_256G1_scaffold_389_29
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29009..29329
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77174.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_059_256G1_scaffold_389_30
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29368..31401
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77175.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Leucyl aminopeptidase (aminopeptidase T)
Displaying items 1-30 of 43 in total

View Taxonomy