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L2_059_256G1_scaffold_438

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_438_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46..1521
DNA (1476bp) protein (492aa)
Potassium uptake protein, TrkH family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWW7_9FIRM
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EHM38226.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative cation transport protein, Trk family
L2_059_256G1_scaffold_438_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1540..2190
DNA (651bp) protein (217aa)
TrkA N-terminal domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2D1_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EDM97518.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
TrkA-N domain-containing protein
L2_059_256G1_scaffold_438_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2202..2966
DNA (765bp) protein (255aa)
RNA methyltransferase (EC:2.1.1.-)
RNA methyltransferase, TrmH family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWW5_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EHM38224.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_059_256G1_scaffold_438_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3025..4260
DNA (1236bp) protein (412aa)
DNA protecting protein DprA n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2C9_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EDM97516.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative smf protein
L2_059_256G1_scaffold_438_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4445..6784
DNA (2340bp) protein (780aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF47_9FIRM
L2_059_256G1_scaffold_438_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6794..8098
DNA (1305bp) protein (435aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
trmFO; tRNA methyltransferase (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF44_9FIRM
L2_059_256G1_scaffold_438_7
unknown

Not on your lists

comp(8329..8562)
DNA (234bp) protein (78aa)

This feature has no annotations

L2_059_256G1_scaffold_438_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8629..8859
DNA (231bp) protein (77aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54599.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative phage repressor
L2_059_256G1_scaffold_438_9
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

8954..9187
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YIP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15472.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
transcriptional regulator
L2_059_256G1_scaffold_438_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9199..9429
DNA (231bp) protein (77aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54599.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
helix-turn-helix domain-containing protein
L2_059_256G1_scaffold_438_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9471..10511
DNA (1041bp) protein (347aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
plsX; acyl-ACP--phosphate acyltransferase (EC:2.3.1.-)
Phosphate acyltransferase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CM61_9CLOT
L2_059_256G1_scaffold_438_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10647..10877
DNA (231bp) protein (77aa)
Acyl carrier protein n=3 Tax=Clostridiales RepID=G9YWV6_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
acyl carrier protein
L2_059_256G1_scaffold_438_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11221..11895
DNA (675bp) protein (225aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B997_9CLOT
L2_059_256G1_scaffold_438_14
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12038..15607
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B877_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
smc; chromosome segregation protein SMC
L2_059_256G1_scaffold_438_15
unknown

Not on your lists

15663..15926
DNA (264bp) protein (88aa)

This feature has no annotations

L2_059_256G1_scaffold_438_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15945..16853
DNA (909bp) protein (303aa)
Signal recognition particle receptor FtsY n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV1_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
signal recognition particle-docking protein FtsY
L2_059_256G1_scaffold_438_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16912..17631
DNA (720bp) protein (240aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2B3_9FIRM
L2_059_256G1_scaffold_438_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17639..18223
DNA (585bp) protein (195aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU9_9FIRM
L2_059_256G1_scaffold_438_19
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18255..18578
DNA (324bp) protein (108aa)
RNA-binding protein, YhbY family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2B1_9FIRM
RNA-binding protein, YhbY family {ECO:0000313|EMBL:EDM97498.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_059_256G1_scaffold_438_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18620..19819
DNA (1200bp) protein (400aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate (Nicotinamide) nucleotide adenylyltransferase n=2 Tax=Clostridiales RepID=H1CF31_9FIRM
L2_059_256G1_scaffold_438_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19825..21363
DNA (1539bp) protein (513aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU5_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EHM38204.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative LytR family regulatory protein
L2_059_256G1_scaffold_438_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21394..21756
DNA (363bp) protein (121aa)
Ribosomal silencing factor RsfS n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU4_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_059_256G1_scaffold_438_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21810..22247)
DNA (438bp) protein (146aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=3 Tax=Clostridiales RepID=G9YQ49_9FIRM
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EHO34846.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
FeS cluster assembly scaffold protein NifU
L2_059_256G1_scaffold_438_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22466..23599
DNA (1134bp) protein (378aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2BB06_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF57103.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_059_256G1_scaffold_438_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23890..26322
DNA (2433bp) protein (811aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR95_9FIRM
L2_059_256G1_scaffold_438_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26502..26684
DNA (183bp) protein (61aa)
30S ribosomal protein S21 n=3 Tax=Clostridiales RepID=G9YX14_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rpsU; 30S ribosomal protein S21
L2_059_256G1_scaffold_438_27
Vibrio splendidus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26963..29599
DNA (2637bp) protein (879aa)
hypothetical protein n=3 Tax=Vibrio splendidus RepID=UPI0002E04050
Uncharacterized protein {ECO:0000313|EMBL:EAP92103.1}; TaxID=314291 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio splendidus 12B01.;"
hypothetical protein
L2_059_256G1_scaffold_438_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29603..30379)
DNA (777bp) protein (259aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32759.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_059_256G1_scaffold_438_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30501..31004
DNA (504bp) protein (168aa)
HAD phosphatase, family IIIA n=2 Tax=Clostridiales RepID=G9YX11_9FIRM
HAD superfamily phosphatase {ECO:0000313|EMBL:KGF54505.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
had superfamily (subfamily IIIa) phosphatase, tigr01668
L2_059_256G1_scaffold_438_30
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31006..31866
DNA (861bp) protein (287aa)
probable deoxyribonuclease IV (EC:3.1.21.2)
AP endonuclease, family 2 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BGS7_9CLOT
AP endonuclease, family 2 {ECO:0000313|EMBL:ERI71088.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Displaying items 1-30 of 32 in total

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