ggKbase home page

L2_059_256G1_scaffold_505

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_505_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135..599)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0MXJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO35085.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_059_256G1_scaffold_505_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(583..1506)
DNA (924bp) protein (308aa)
SufB/sufD domain protein n=3 Tax=Clostridiales RepID=G9YPH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35086.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_059_256G1_scaffold_505_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1506..2246)
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=3 Tax=Clostridiales RepID=G9YPH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57345.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative iron-sulfur cluster assembly protein
L2_059_256G1_scaffold_505_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2668..3369
DNA (702bp) protein (234aa)
Rubrerythrin n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPH3_9FIRM
Rubrerythrin {ECO:0000313|EMBL:EHM52569.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_059_256G1_scaffold_505_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3437..4648)
DNA (1212bp) protein (404aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAV5_9FIRM
L2_059_256G1_scaffold_505_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4809..6959)
DNA (2151bp) protein (717aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=2 Tax=Clostridiales RepID=G9YPY2_9FIRM
L2_059_256G1_scaffold_505_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7290..7556)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=3 Tax=Clostridiales RepID=G9YPY1_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
30S ribosomal protein S15
L2_059_256G1_scaffold_505_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7827..9089)
DNA (1263bp) protein (421aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH04_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_059_256G1_scaffold_505_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9086..9763)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XH03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45642.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_059_256G1_scaffold_505_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9937..10653
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47006.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
VTC domain protein
L2_059_256G1_scaffold_505_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10646..11998
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47004.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_059_256G1_scaffold_505_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12436..12789
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWB7_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:KJF38408.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
transcriptional regulator, ArsR family
L2_059_256G1_scaffold_505_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12815..13471
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWB8_9FIRM
Nitroreductase {ECO:0000313|EMBL:KJF38409.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Nitroreductase family protein
L2_059_256G1_scaffold_505_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13862..14521)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53106.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_059_256G1_scaffold_505_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14908..15798)
DNA (891bp) protein (297aa)
Transcription regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNU0_9FIRM
Transcription regulator {ECO:0000313|EMBL:CCZ79730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LysR family transcriptional regulator
L2_059_256G1_scaffold_505_16
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15955..17127
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4Y4_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98423.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L2_059_256G1_scaffold_505_17
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

17140..17670
DNA (531bp) protein (177aa)
Flavodoxin n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H2C0_9FIRM
Flavodoxin {ECO:0000313|EMBL:CDB30930.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L2_059_256G1_scaffold_505_18
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17667..18512
DNA (846bp) protein (282aa)
Oxidoreductase, aldo/keto reductase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5K1_ROSHA
aldo/keto reductase oxidoreductase
Oxidoreductase, aldo/keto reductase {ECO:0000313|EMBL:AEN97849.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L2_059_256G1_scaffold_505_19
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18524..19249
DNA (726bp) protein (242aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase n=2 Tax=Desulfitobacterium hafniense RepID=B8FSE7_DESHD
5-amino-6-(5-phosphoribosylamino)uracil reductase
Putative uncharacterized protein {ECO:0000313|EMBL:BAE84543.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
L2_059_256G1_scaffold_505_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

19274..20044
DNA (771bp) protein (257aa)
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZC20_9ACTN
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit {ECO:0000313|EMBL:CDA36420.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
L2_059_256G1_scaffold_505_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20046..20585
DNA (540bp) protein (180aa)
Flavin reductase {ECO:0000313|EMBL:EFQ07133.1}; EC=1.7.-.- {ECO:0000313|EMBL:EFQ07133.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Flavin reductase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZI58_9FIRM
Multimeric flavodoxin WrbA
L2_059_256G1_scaffold_505_22
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20631..20957)
DNA (327bp) protein (109aa)
Transcriptional regulator, HxlR family n=2 Tax=Clostridium RepID=D4CEJ4_9CLOT
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EFE11852.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
transcriptional regulator, MarR family
L2_059_256G1_scaffold_505_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21104..21505
DNA (402bp) protein (134aa)
Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56211.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_059_256G1_scaffold_505_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21688..22443)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01279.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_059_256G1_scaffold_505_25
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22839..23066)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B57CC9
Uncharacterized protein {ECO:0000313|EMBL:EEX20626.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
L2_059_256G1_scaffold_505_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23334..23603
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM48569.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Phage-like protein endonuclease-like protein
L2_059_256G1_scaffold_505_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23730..24008
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C036_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77428.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L2_059_256G1_scaffold_505_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24576..25172)
DNA (597bp) protein (199aa)
Sigma-70, region 4 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRK8_9FIRM
Sigma-70, region 4 {ECO:0000313|EMBL:EHM49098.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
sig4; RNA polymerase sigma factor, sigma-70 family
L2_059_256G1_scaffold_505_29
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25658..26416)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TEI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68084.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L2_059_256G1_scaffold_505_30
unknown

Not on your lists

comp(26480..26884)
DNA (405bp) protein (135aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

View Taxonomy