ggKbase home page

L2_059_256G1_scaffold_893

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_893_1
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(204..1154)
DNA (951bp) protein (317aa)
RNA methyltransferase TrmH family n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P424_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR02488.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
RNA methyltransferase
L2_059_256G1_scaffold_893_2
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1296..1946)
DNA (651bp) protein (217aa)
Putative orotate phosphoribosyltransferase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSV3_9BIFI
Putative orotate phosphoribosyltransferase {ECO:0000313|EMBL:EEB22258.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR02489.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
orotate phosphoribosyltransferase
L2_059_256G1_scaffold_893_3
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2014..3345)
DNA (1332bp) protein (444aa)
RmuC domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSV2_9BIFI
RmuC domain protein {ECO:0000313|EMBL:EEB22257.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR02490.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L2_059_256G1_scaffold_893_4
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3518..4357
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSV1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB22256.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ATPase P
L2_059_256G1_scaffold_893_5
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4512..7217)
DNA (2706bp) protein (902aa)
ATP-dependent chaperone protein ClpB n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSV0_9BIFI
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ATPase AAA
L2_059_256G1_scaffold_893_6
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7439..8353)
DNA (915bp) protein (305aa)
FAH family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ3_9BIFI
FAH family protein {ECO:0000313|EMBL:EEB22254.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
L2_059_256G1_scaffold_893_7
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8389..9231)
DNA (843bp) protein (281aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ2_9BIFI
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EEB22253.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR02494.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L2_059_256G1_scaffold_893_8
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9456..9956)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB22252.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
transposase
L2_059_256G1_scaffold_893_9
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10072..11175
DNA (1104bp) protein (368aa)
tRNA ligase class I (E and Q), catalytic domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSZ0_9BIFI
Putative tRNA synthase {ECO:0000313|EMBL:BAR02496.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
glutamyl-Q tRNA(Asp) ligase
L2_059_256G1_scaffold_893_10
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11407..12135)
DNA (729bp) protein (243aa)
MIP family channel protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSY9_9BIFI
Glycerol uptake facilitator protein {ECO:0000313|EMBL:BAR02497.1}; MIP family channel protein {ECO:0000313|EMBL:EEB22250.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
glycerol uptake permease
L2_059_256G1_scaffold_893_11
unknown

Not on your lists

12281..12391
DNA (111bp) protein (37aa)

This feature has no annotations

L2_059_256G1_scaffold_893_12
unknown

Not on your lists

comp(12605..12868)
DNA (264bp) protein (88aa)

This feature has no annotations

L2_059_256G1_scaffold_893_13
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12948..13394)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSY7_9BIFI
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
50S ribosomal protein L9
L2_059_256G1_scaffold_893_14
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13414..13662)
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=3 Tax=Bifidobacterium RepID=B6XSY6_9BIFI
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_059_256G1_scaffold_893_15
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13723..14382)
DNA (660bp) protein (220aa)
Single-stranded DNA-binding protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSY5_9BIFI
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
single-stranded DNA-binding protein
L2_059_256G1_scaffold_893_16
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14439..14726)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=6 Tax=Bifidobacterium RepID=A1A3I1_BIFAA
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L2_059_256G1_scaffold_893_17
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14992..16005
DNA (1014bp) protein (338aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSY3_9BIFI
L2_059_256G1_scaffold_893_18
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16110..17090)
DNA (981bp) protein (327aa)
Putative ribokinase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BUS3_9BIFI
Sugar kinase {ECO:0000313|EMBL:BAR02504.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
sugar kinase
L2_059_256G1_scaffold_893_19
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17210..18166)
DNA (957bp) protein (319aa)
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XT05_9BIFI
Inosine-uridine nucleoside hydrolase {ECO:0000313|EMBL:BAR02505.1}; Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:EEB22239.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
nucleoside hydrolase
L2_059_256G1_scaffold_893_20
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18442..19500)
DNA (1059bp) protein (353aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XT04_9BIFI
Transcriptional regulator {ECO:0000313|EMBL:BAR02506.1}; Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEB22238.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
ribose operon repressor RbsR
L2_059_256G1_scaffold_893_21
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19702..20073
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P122_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ15195.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_059_256G1_scaffold_893_22
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20080..21135)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XT00_9BIFI
L2_059_256G1_scaffold_893_23
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21302..21538
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NY48_BIFBP
hypothetical protein
AAA+ superfamily protein {ECO:0000313|EMBL:AJE06619.1}; TaxID=1680 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis.;"
Displaying 23 items

View Taxonomy