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L2_059_256G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_52_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..376
DNA (375bp) protein (125aa)
Thermophilic metalloprotease (M29) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP1_9FIRM
Thermophilic metalloprotease (M29) {ECO:0000313|EMBL:EFB76339.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptidase M29 aminopeptidase II
L2_059_256G1_scaffold_52_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

364..1542
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75409.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
sugar ABC transporter permease
L2_059_256G1_scaffold_52_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1672..2166
DNA (495bp) protein (165aa)
Ribosome maturation factor RimP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_52_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2344..3417
DNA (1074bp) protein (358aa)
Transcription termination factor NusA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN7_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription termination factor NusA
L2_059_256G1_scaffold_52_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3569..3877
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76334.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L2_059_256G1_scaffold_52_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3870..4172
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN5_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:EFB76333.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_52_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4191..6641
DNA (2451bp) protein (817aa)
Translation initiation factor IF-2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial translation initiation factor 2 (bIF-2)
L2_059_256G1_scaffold_52_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6659..7024
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN3_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-binding factor A
L2_059_256G1_scaffold_52_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7055..8041
DNA (987bp) protein (329aa)
DHHA1 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN2_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EFB76330.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Exopolyphosphatase-related proteins
L2_059_256G1_scaffold_52_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8106..8999
DNA (894bp) protein (298aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM
L2_059_256G1_scaffold_52_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9007..9927
DNA (921bp) protein (307aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN0_9FIRM
L2_059_256G1_scaffold_52_12
unknown

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9953..10282
DNA (330bp) protein (110aa)

This feature has no annotations

L2_059_256G1_scaffold_52_13
unknown

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10337..11536
DNA (1200bp) protein (400aa)

This feature has no annotations

L2_059_256G1_scaffold_52_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11692..11964
DNA (273bp) protein (91aa)
30S ribosomal protein S15 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM9_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S15P
L2_059_256G1_scaffold_52_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12267..14426
DNA (2160bp) protein (720aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM
L2_059_256G1_scaffold_52_16
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(14621..14800)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BJT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD66034.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
L2_059_256G1_scaffold_52_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14970..16178)
DNA (1209bp) protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM7_9FIRM
L2_059_256G1_scaffold_52_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16358..17524
DNA (1167bp) protein (389aa)
UPF0348 protein SUBVAR_05242 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM5_9FIRM
UPF0348 protein SUBVAR_05242 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted nucleotidyltransferase
L2_059_256G1_scaffold_52_19
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17609..18889
DNA (1281bp) protein (427aa)
Glutamate synthase (NADPH) small chain n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HF14_9FIRM
Glutamate synthase (NADPH) small chain {ECO:0000313|EMBL:CDE36757.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
oxidoreductase
L2_059_256G1_scaffold_52_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18923..19801)
DNA (879bp) protein (293aa)
LysR substrate binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB5_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EFB76773.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional regulator
L2_059_256G1_scaffold_52_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20180..21091
DNA (912bp) protein (304aa)
CAAX amino terminal protease family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB6_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFB76774.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CAAX amino terminal protease family protein
L2_059_256G1_scaffold_52_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21101..21562
DNA (462bp) protein (154aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB7_9FIRM
L2_059_256G1_scaffold_52_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21565..22305
DNA (741bp) protein (247aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB8_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFB76776.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
short-chain dehydrogenase/reductase SDR
L2_059_256G1_scaffold_52_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22305..22889
DNA (585bp) protein (195aa)
Uncharacterized low-complexity proteins n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3E8_9FIRM
Uncharacterized low-complexity proteins
Uncharacterized low-complexity proteins {ECO:0000313|EMBL:CBK98041.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_059_256G1_scaffold_52_25
unknown

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22886..23029
DNA (144bp) protein (48aa)

This feature has no annotations

L2_059_256G1_scaffold_52_26
Anaerococcus vaginalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22983..23141
DNA (159bp) protein (53aa)
acetyltransferase GCN5 n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5D2BA
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEU13047.1}; TaxID=655811 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus vaginalis ATCC 51170.;"
L2_059_256G1_scaffold_52_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23232..24119
DNA (888bp) protein (296aa)
Autolytic lysozyme {ECO:0000313|EMBL:EFB75757.1}; EC=3.2.1.17 {ECO:0000313|EMBL:EFB75757.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Autolytic lysozyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH2_9FIRM
glycoside hydrolase family protein
L2_059_256G1_scaffold_52_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24306..26285
DNA (1980bp) protein (660aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit (EC:5.99.1.3)
DNA gyrase, B subunit, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH3_9FIRM
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:EFB75758.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_52_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26513..28756
DNA (2244bp) protein (748aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit (EC:5.99.1.3)
DNA gyrase/topoisomerase IV, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH4_9FIRM
DNA gyrase/topoisomerase IV, A subunit {ECO:0000313|EMBL:EFB75759.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_52_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28998..29204
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL98_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L31P
Displaying items 1-30 of 81 in total

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