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L2_059_256G1_scaffold_181

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_181_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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489..3197
DNA (2709bp) protein (903aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK53_9FIRM
L2_059_256G1_scaffold_181_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3452..4321)
DNA (870bp) protein (290aa)
Ricin-type beta-trefoil lectin domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK51_9FIRM
Ricin-type beta-trefoil lectin domain protein {ECO:0000313|EMBL:EFB77149.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ricin-type beta-trefoil lectin domain.
L2_059_256G1_scaffold_181_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4562..6493)
DNA (1932bp) protein (644aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK49_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77147.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
multidrug/protein/lipid ABC transporter ATPase
L2_059_256G1_scaffold_181_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6493..8250)
DNA (1758bp) protein (586aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK48_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77146.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L2_059_256G1_scaffold_181_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8268..8762)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77145.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
marR2; regulatory protein MarR
L2_059_256G1_scaffold_181_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8924..10075)
DNA (1152bp) protein (384aa)
Cell division protein FtsI/penicillin-binding protein 2 n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2Y4_9FIRM
Cell division protein FtsI/penicillin-binding protein 2
Cell division protein FtsI/penicillin-binding protein 2 {ECO:0000313|EMBL:CBK97877.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_059_256G1_scaffold_181_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10048..10614)
DNA (567bp) protein (189aa)
Penicillin-binding protein dimerization domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJU0_9FIRM
Penicillin-binding protein dimerization domain protein {ECO:0000313|EMBL:EFB77038.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cell division protein FtsI/penicillin-binding protein 2
L2_059_256G1_scaffold_181_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10810..12027
DNA (1218bp) protein (406aa)
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:EFB77036.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EFB77036.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Alcohol dehydrogenase, iron-dependent n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT8_9FIRM
Alcohol dehydrogenase, class IV
L2_059_256G1_scaffold_181_9
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12293..13648
DNA (1356bp) protein (452aa)
MATE efflux family protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A609_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EMZ21500.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
putative efflux protein, MATE family
L2_059_256G1_scaffold_181_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13711..15837)
DNA (2127bp) protein (709aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE7_9FIRM
L2_059_256G1_scaffold_181_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15994..16242)
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE8_9FIRM
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EFB76806.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase subunit SecG
L2_059_256G1_scaffold_181_12
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16363..17337)
DNA (975bp) protein (325aa)
Penicillin V acylase and related amidases (EC:3.5.1.24)
Choloylglycine hydrolase n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D9J8_9FIRM
Choloylglycine hydrolase {ECO:0000313|EMBL:CDD87070.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L2_059_256G1_scaffold_181_13
Streptococcus infantarius, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17864..18658)
DNA (795bp) protein (265aa)
Capsular polysaccharide biosynthesis protein CpsC n=1 Tax=Streptococcus infantarius (strain CJ18) RepID=H6P8L9_STRIC
cpsC; capsular polysaccharide biosynthesis protein CpsC
Capsular polysaccharide biosynthesis protein CpsC {ECO:0000313|EMBL:AEZ62057.1}; TaxID=1069533 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus infantarius (strain CJ18).;"
L2_059_256G1_scaffold_181_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19587..20663
DNA (1077bp) protein (359aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM1_9FIRM
Phosphofructokinase {ECO:0000313|EMBL:EFB76319.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_181_15
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20752..22677)
DNA (1926bp) protein (642aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QIE6_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 {ECO:0000313|EMBL:CDC30681.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L2_059_256G1_scaffold_181_16
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22833..23741)
DNA (909bp) protein (303aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R894_9FIRM
L2_059_256G1_scaffold_181_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23738..24493)
DNA (756bp) protein (252aa)
Transcriptional regulator, DeoR family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H375_9FIRM
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEU97640.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Transcriptional regulators of sugar metabolism
L2_059_256G1_scaffold_181_18
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24704..27178)
DNA (2475bp) protein (825aa)
Excinuclease ATPase subunit n=1 Tax=Clostridium sp. CAG:81 RepID=R5GDS8_9CLOT
Excinuclease ATPase subunit {ECO:0000313|EMBL:CCY10641.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Excinuclease ATPase subunit
L2_059_256G1_scaffold_181_19
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(27244..27516)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EM41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01673.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Branched-chain amino acid transport protein (AzlD).
L2_059_256G1_scaffold_181_20
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27536..28264)
DNA (729bp) protein (243aa)
Predicted branched-chain amino acid permease (Azaleucine resistance) n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QAW5_9FIRM
Predicted branched-chain amino acid permease (Azaleucine resistance) {ECO:0000313|EMBL:CDC27926.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L2_059_256G1_scaffold_181_21
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28432..29127
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FWY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92943.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
TraX protein.
L2_059_256G1_scaffold_181_22
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29282..31330
DNA (2049bp) protein (683aa)
Signal transduction histidine kinase n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LQG1_9FIRM
Signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL23019.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L2_059_256G1_scaffold_181_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31860..33170
DNA (1311bp) protein (437aa)
Chloride transporter, ClC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN62_9FIRM
Chloride transporter, ClC family {ECO:0000313|EMBL:EFB75996.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
voltage gated chloride channel family
L2_059_256G1_scaffold_181_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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33226..34407
DNA (1182bp) protein (394aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN64_9FIRM
L2_059_256G1_scaffold_181_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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34407..36215
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Elongation factor 4 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN65_9FIRM
GTP-binding protein LepA
L2_059_256G1_scaffold_181_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36371..37519)
DNA (1149bp) protein (383aa)
Lactaldehyde reductase {ECO:0000313|EMBL:EEU96448.1}; EC=1.1.1.77 {ECO:0000313|EMBL:EEU96448.1};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase n=2 Tax=root RepID=C7H6C0_9FIRM
L2_059_256G1_scaffold_181_27
unknown

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comp(37656..37796)
DNA (141bp) protein (47aa)

This feature has no annotations

L2_059_256G1_scaffold_181_28
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37969..38592)
DNA (624bp) protein (208aa)
H(+)-transporting ATP synthase, vacuolar type, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4R0_9FIRM
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L2_059_256G1_scaffold_181_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38765..40153)
DNA (1389bp) protein (463aa)
Archaeal/vacuolar-type H+-ATPase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWS0_9FIRM
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L2_059_256G1_scaffold_181_30
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40169..41923)
DNA (1755bp) protein (585aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
atpA; V-type ATP synthase alpha chain (EC:3.6.3.14)
V-type ATP synthase alpha chain n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7T3_9FIRM
Displaying items 1-30 of 51 in total

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