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L2_059_256G1_scaffold_192

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_192_1
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

661..1248
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H8J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY21056.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
L2_059_256G1_scaffold_192_2
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

1331..1717
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R7A0V8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD46921.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
hypothetical protein
L2_059_256G1_scaffold_192_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1821..2813
DNA (993bp) protein (331aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFB75087.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFB75087.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.28)
4-phosphoerythronate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE2_9FIRM
L2_059_256G1_scaffold_192_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3019..4116)
DNA (1098bp) protein (366aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
D-mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP7_9FIRM
L2_059_256G1_scaffold_192_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4273..5889)
DNA (1617bp) protein (539aa)
Mannitol dehydrogenase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP8_9FIRM
Mannitol dehydrogenase domain protein {ECO:0000313|EMBL:EFB74281.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
mannitol dehydrogenase domain-containing protein
L2_059_256G1_scaffold_192_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6189..7052
DNA (864bp) protein (288aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSQ0_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB74283.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rhaS; AraC-type sugar metabolism regulator
L2_059_256G1_scaffold_192_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7649..9364)
DNA (1716bp) protein (572aa)
Nitrogen regulatory protein P-II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQI1_9FIRM
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EFB75039.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ammonium transporter
L2_059_256G1_scaffold_192_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9806..10219
DNA (414bp) protein (138aa)
Sodium pump decarboxylase, gamma subunit (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP4_9FIRM
Sodium pump decarboxylase, gamma subunit {ECO:0000313|EMBL:EFB74291.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Oxaloacetate decarboxylase, gamma chain.
L2_059_256G1_scaffold_192_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10232..11425
DNA (1194bp) protein (398aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.70 4.1.1.3)
Sodium ion-translocating decarboxylase, beta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP5_9FIRM
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EFB74278.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_192_10
unknown

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comp(11716..12771)
DNA (1056bp) protein (352aa)

This feature has no annotations

L2_059_256G1_scaffold_192_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12775..13263)
DNA (489bp) protein (163aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38395.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L2_059_256G1_scaffold_192_12

Not on your lists

13391..14281
DNA (891bp) protein (297aa)
Metal-dependent hydrolases of the beta-lactamase superfamily III (EC:3.1.26.11)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61657.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L2_059_256G1_scaffold_192_13

Not on your lists

14278..14610
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61656.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
L2_059_256G1_scaffold_192_14

Not on your lists

14627..15127
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA1_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61655.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L2_059_256G1_scaffold_192_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15269..16402
DNA (1134bp) protein (378aa)
Exonuclease SbcCD, D subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQD5_9FIRM
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EFB75092.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
exonuclease SbcD
L2_059_256G1_scaffold_192_16

Not on your lists

16399..18894
DNA (2496bp) protein (832aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE99_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61653.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ATPase involved in DNA repair
L2_059_256G1_scaffold_192_17

Not on your lists

19076..20491
DNA (1416bp) protein (472aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE98_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61652.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
arginine/lysine/ornithine decarboxylase
L2_059_256G1_scaffold_192_18
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20481..21689)
DNA (1209bp) protein (403aa)
aminotransferase (EC:4.4.1.14)
Cystathione beta-lyase n=2 Tax=Lachnospiraceae bacterium A2 RepID=R9KLE5_9FIRM
Cystathione beta-lyase {ECO:0000313|EMBL:EOS47245.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
L2_059_256G1_scaffold_192_19

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comp(21813..23273)
DNA (1461bp) protein (487aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE97_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61651.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L2_059_256G1_scaffold_192_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23386..23532)
DNA (147bp) protein (49aa)
RSAM-modified six-cysteine peptide n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF4_9FIRM
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:EFB75077.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_192_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23614..25401)
DNA (1788bp) protein (596aa)
Peptidase, M24 family {ECO:0000313|EMBL:EFB75083.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB75083.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Peptidase, M24 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG0_9FIRM
L2_059_256G1_scaffold_192_22
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25792..27000
DNA (1209bp) protein (403aa)
Putative GTPases (G3E family) n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QI55_9FIRM
Putative GTPases (G3E family)
Putative GTPases (G3E family) {ECO:0000313|EMBL:CDC30566.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_059_256G1_scaffold_192_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27250..28227
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75080.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CobW/HypB/UreG, nucleotide-binding domain.
L2_059_256G1_scaffold_192_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28392..29357)
DNA (966bp) protein (322aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP7_9FIRM
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EFB74588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_192_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29367..30566)
DNA (1200bp) protein (400aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB74587.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB74587.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aminotransferase (EC:2.6.1.1)
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP6_9FIRM
L2_059_256G1_scaffold_192_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30860..31516)
DNA (657bp) protein (219aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:3.1.3.18)
Putative phosphoglycolate phosphatase, bacterial n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP5_9FIRM
Putative phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EFB74586.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_192_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31688..32548
DNA (861bp) protein (287aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP4_9FIRM
L2_059_256G1_scaffold_192_28
unknown

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comp(32446..32691)
DNA (246bp) protein (82aa)

This feature has no annotations

L2_059_256G1_scaffold_192_29
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(32729..34444)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AMM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX40496.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
hypothetical protein
L2_059_256G1_scaffold_192_30
unknown

Not on your lists

comp(34449..34547)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying items 1-30 of 72 in total

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