ggKbase home page

L2_059_256G1_scaffold_406

Search features with annotation key words

Displaying 28 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_406_1
unknown

Not on your lists

239..559
DNA (321bp) protein (107aa)

This feature has no annotations

L2_059_256G1_scaffold_406_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(693..2183)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76959.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_406_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2252..4336
DNA (2085bp) protein (695aa)
Putative peptidoglycan binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP5_9FIRM
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EFB76993.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative peptidoglycan-binding domain-containing protein
L2_059_256G1_scaffold_406_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4340..5029
DNA (690bp) protein (230aa)
Putative peptidoglycan binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP4_9FIRM
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EFB76992.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative peptidoglycan-binding domain-containing protein
L2_059_256G1_scaffold_406_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5087..5662
DNA (576bp) protein (192aa)
Nitroreductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP3_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFB76991.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Nitroreductase
L2_059_256G1_scaffold_406_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5786..7354)
DNA (1569bp) protein (523aa)
Alpha amylase, catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP2_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EFB76990.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amy13G; alpha-amylase
L2_059_256G1_scaffold_406_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7712..9442
DNA (1731bp) protein (577aa)
Carbon starvation protein CstA n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5S9_9FIRM
Carbon starvation protein CstA {ECO:0000313|EMBL:EEU96760.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Carbon starvation protein, predicted membrane protein
L2_059_256G1_scaffold_406_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9626..10525
DNA (900bp) protein (300aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP0_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFB76988.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
family 3 extracellular solute-binding protein
L2_059_256G1_scaffold_406_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10593..11417
DNA (825bp) protein (275aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB76987.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polar amino acid ABC transporter inner membrane subunit
L2_059_256G1_scaffold_406_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11410..12150
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJN8_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76986.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L2_059_256G1_scaffold_406_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12527..16012)
DNA (3486bp) protein (1162aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative ATP-dependent nuclease subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS3_9FIRM
recombination helicase AddA
L2_059_256G1_scaffold_406_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16029..19364)
DNA (3336bp) protein (1112aa)
Putative ATP-dependent nuclease subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS4_9FIRM
Putative ATP-dependent nuclease subunit B {ECO:0000313|EMBL:EFB76372.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent nuclease, subunit B
L2_059_256G1_scaffold_406_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19482..20105)
DNA (624bp) protein (208aa)
Putative stage II sporulation protein R n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS5_9FIRM
Putative stage II sporulation protein R {ECO:0000313|EMBL:EFB76373.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative stage II sporulation protein R
L2_059_256G1_scaffold_406_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20158..21054)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS6_9FIRM
L2_059_256G1_scaffold_406_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21077..22255)
DNA (1179bp) protein (393aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB76375.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB76375.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS7_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L2_059_256G1_scaffold_406_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22255..22734)
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS8_9FIRM
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EFB76376.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional regulators
L2_059_256G1_scaffold_406_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22865..23767)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76377.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_406_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23891..24955)
DNA (1065bp) protein (355aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT0_9FIRM
L2_059_256G1_scaffold_406_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24959..25864)
DNA (906bp) protein (302aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EFB76379.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EFB76379.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT1_9FIRM
L2_059_256G1_scaffold_406_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25883..26767)
DNA (885bp) protein (295aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT2_9FIRM
L2_059_256G1_scaffold_406_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27057..27395
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76381.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_406_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27531..28463
DNA (933bp) protein (311aa)
Putative sortase, SrtB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT4_9FIRM
Putative sortase, SrtB family {ECO:0000313|EMBL:EFB76382.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_406_23
unknown

Not on your lists

comp(28761..29039)
DNA (279bp) protein (93aa)
Membrane or secreted protein containing Peptidase M23 domain protein n=1 Tax=human gut metagenome RepID=K1SGQ0_9ZZZZ
L2_059_256G1_scaffold_406_24
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29264..30052)
DNA (789bp) protein (263aa)
Beta-propeller domains of methanol dehydrogenase type n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QHI0_9FIRM
Beta-propeller domains of methanol dehydrogenase type {ECO:0000313|EMBL:CDC30361.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Beta-propeller domains of methanol dehydrogenase type
L2_059_256G1_scaffold_406_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30069..31145)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H304_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU97738.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L2_059_256G1_scaffold_406_26
unknown

Not on your lists

comp(31145..31633)
DNA (489bp) protein (163aa)

This feature has no annotations

L2_059_256G1_scaffold_406_27
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(31633..32949)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J094_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42426.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Putative virion core protein (lumpy skin disease virus)
L2_059_256G1_scaffold_406_28
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(33013..34698)
DNA (1686bp) protein (562aa)
FHA domain containing protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW08_ROSS1
FHA domain-containing protein
FHA domain containing protein {ECO:0000313|EMBL:ABQ90811.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Displaying 28 items

View Taxonomy