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L2_059_256G1_scaffold_988

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_256G1_scaffold_988_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(216..1538)
DNA (1323bp) protein (441aa)
Alpha amylase, catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ6_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EFB76294.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cyclomaltodextrinase
L2_059_256G1_scaffold_988_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1557..2096)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76295.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_988_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2314..3120)
DNA (807bp) protein (269aa)
Polysaccharide deacetylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ8_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:EFB76296.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted xylanase/chitin deacetylase
L2_059_256G1_scaffold_988_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3240..3512
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNC0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95692.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_059_256G1_scaffold_988_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3781..5256)
DNA (1476bp) protein (492aa)
Cation transport protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLJ9_9FIRM
Cation transport protein {ECO:0000313|EMBL:EFB76297.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
trkH; Trk system potassium uptake protein TrkH
L2_059_256G1_scaffold_988_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5267..6634)
DNA (1368bp) protein (456aa)
TrkA N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLK0_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EFB76298.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
trkA; Trk system potassium uptake protein TrkA
L2_059_256G1_scaffold_988_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6900..7184
DNA (285bp) protein (95aa)
30S ribosomal protein S6 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJS7_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S6P
L2_059_256G1_scaffold_988_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7198..7677
DNA (480bp) protein (160aa)
Single-stranded DNA-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJS6_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
single-strand binding protein
L2_059_256G1_scaffold_988_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7715..7957
DNA (243bp) protein (81aa)
30S ribosomal protein S18 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJS5_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S18P
L2_059_256G1_scaffold_988_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8194..9843)
DNA (1650bp) protein (550aa)
PASTA domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW2_9FIRM
PASTA domain protein {ECO:0000313|EMBL:EFB76410.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_059_256G1_scaffold_988_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10032..10769)
DNA (738bp) protein (246aa)
Probable transcriptional regulatory protein SUBVAR_05330 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW3_9FIRM
Probable transcriptional regulatory protein SUBVAR_05330 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR01033
L2_059_256G1_scaffold_988_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10881..12254)
DNA (1374bp) protein (458aa)
NOL1/NOP2/sun family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW9_9FIRM
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EFB75904.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA and rRNA cytosine-C5-methylases
L2_059_256G1_scaffold_988_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12358..12495
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75905.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_988_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12654..13058)
DNA (405bp) protein (135aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Mini-ribonuclease 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX1_9FIRM
hypothetical protein
L2_059_256G1_scaffold_988_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13071..14354)
DNA (1284bp) protein (428aa)
GTPase Obg n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX2_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Obg family GTPase CgtA
L2_059_256G1_scaffold_988_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14415..14666)
DNA (252bp) protein (84aa)
50S ribosomal protein L27 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX3_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L27P
L2_059_256G1_scaffold_988_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14681..14992)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX4_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L21P
L2_059_256G1_scaffold_988_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15174..16025)
DNA (852bp) protein (284aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX5_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_059_256G1_scaffold_988_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16129..17166)
DNA (1038bp) protein (346aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX6_9FIRM
L2_059_256G1_scaffold_988_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17183..18481)
DNA (1299bp) protein (433aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EFB75912.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB75912.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidase M16 inactive domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX7_9FIRM
Predicted Zn-dependent peptidases
L2_059_256G1_scaffold_988_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18471..19772)
DNA (1302bp) protein (434aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EFB75913.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB75913.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidase M16 inactive domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMX8_9FIRM
Predicted Zn-dependent peptidases
Displaying 21 items

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