ggKbase home page

L2_059_382G1_scaffold_1108

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_382G1_scaffold_1108_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(936..1139)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09783.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L2_059_382G1_scaffold_1108_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1129..1578)
DNA (450bp) protein (150aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK1_9FIRM
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EDS09784.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA-directed RNA polymerase specialized sigma subunit
L2_059_382G1_scaffold_1108_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2136..2564)
DNA (429bp) protein (143aa)
4Fe-4S binding domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK3_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDS09786.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
L2_059_382G1_scaffold_1108_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2561..2896)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09787.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
4Fe-4S ferredoxin
L2_059_382G1_scaffold_1108_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2893..3513)
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK5_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDS09788.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
TetR family transcriptional regulator
L2_059_382G1_scaffold_1108_6
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

3881..4138
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ETD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03175.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L2_059_382G1_scaffold_1108_7
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

4141..5793
DNA (1653bp) protein (551aa)
TnpX site-specific recombinase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1A4_9FIRM
TnpX site-specific recombinase {ECO:0000313|EMBL:CDB03174.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
L2_059_382G1_scaffold_1108_8
unknown

Not on your lists

6086..6640
DNA (555bp) protein (185aa)

This feature has no annotations

L2_059_382G1_scaffold_1108_9
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7783..8109)
DNA (327bp) protein (109aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MI43_9FIRM
cas2; CRISPR-associated protein Cas2
L2_059_382G1_scaffold_1108_10
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(8579..9601)
DNA (1023bp) protein (341aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BMY4_9FIRM
CRISPR-associated protein Cas1
L2_059_382G1_scaffold_1108_11
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(9609..10274)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BU54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA64494.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
cas4; CRISPR-associated protein Cas4
L2_059_382G1_scaffold_1108_12
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(10274..11131)
DNA (858bp) protein (286aa)
Crispr-protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BJQ6_9FIRM
Crispr-protein {ECO:0000313|EMBL:CDA64493.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
cas_csd2; CRISPR-associated protein, Csd2 family
L2_059_382G1_scaffold_1108_13
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(11152..12930)
DNA (1779bp) protein (593aa)
Crispr-protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CGU4_9FIRM
Crispr-protein {ECO:0000313|EMBL:CDA64492.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
cas_csd1; CRISPR-associated protein, Csd1 family
L2_059_382G1_scaffold_1108_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12924..13652)
DNA (729bp) protein (243aa)
CRISPR-associated protein Cas5, Dvulg subtype n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EH15_9FIRM
CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:EEQ57500.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
cas5; CRISPR-associated protein Cas5, Dvulg subtype
L2_059_382G1_scaffold_1108_15
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13723..15924)
DNA (2202bp) protein (734aa)
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EEQ57501.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEQ57501.1};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
CRISPR-associated endonuclease Cas3-HD n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EH16_9FIRM
cas3; CRISPR-associated helicase Cas3
L2_059_382G1_scaffold_1108_16
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16037..16423)
DNA (387bp) protein (129aa)
Nucleotidyltransferase substrate-binding family protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GA17_9FIRM
Nucleotidyltransferase substrate-binding family protein {ECO:0000313|EMBL:CCY14145.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
nucleotidyltransferase substrate binding protein, HI0074 family
L2_059_382G1_scaffold_1108_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16410..16703)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JEB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76531.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Nucleotidyltransferase domain.
L2_059_382G1_scaffold_1108_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17036..17896)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R810_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49768.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
cytoplasmic protein
L2_059_382G1_scaffold_1108_19
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(17978..18769)
DNA (792bp) protein (264aa)
Short chain dehydrogenase/reductase family oxidoreductase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F382_9FIRM
Short chain dehydrogenase/reductase family oxidoreductase {ECO:0000313|EMBL:CDB03441.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
short-chain dehydrogenase/reductase sdr
L2_059_382G1_scaffold_1108_20
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(18833..19564)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EU32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03440.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L2_059_382G1_scaffold_1108_21
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(19598..20764)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EPX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02633.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
NADPH-dependent FMN reductase
L2_059_382G1_scaffold_1108_22
unknown

Not on your lists

comp(21019..21132)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 22 items

View Taxonomy