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L2_059_382G1_scaffold_1349

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_382G1_scaffold_1349_1
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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668..1858
DNA (1191bp) protein (397aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EGC01262.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EGC01262.1};; EC=6.3.2.5 {ECO:0000313|EMBL:EGC01262.1};; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
coaBC; Phosphopantothenoyl cysteine decarboxylase / phosphopantothenate--cysteine ligase (bifunctional enzyme ) (EC:4.1.1.36)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Ruminococcus albus 8 RepID=E9SHW4_RUMAL
L2_059_382G1_scaffold_1349_2
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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1984..2220
DNA (237bp) protein (79aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XH69_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDA14170.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
putative transcriptional regulator
L2_059_382G1_scaffold_1349_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2449..2769
DNA (321bp) protein (107aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=B0P4Y8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS20391.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
L2_059_382G1_scaffold_1349_4
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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2842..4494
DNA (1653bp) protein (551aa)
LysM domain-containing protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DMY7_9FIRM
LysM domain-containing protein {ECO:0000313|EMBL:CDA89903.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
LysM domain-containing membrane protein
L2_059_382G1_scaffold_1349_5
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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4546..5334
DNA (789bp) protein (263aa)
Stage II sporulation protein R n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FL63_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:CDB02802.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
stage II sporulation protein R
L2_059_382G1_scaffold_1349_6
unknown

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5331..5528
DNA (198bp) protein (66aa)

This feature has no annotations

L2_059_382G1_scaffold_1349_7
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(5977..7188)
DNA (1212bp) protein (404aa)
isocitrate dehydrogenase (NAD(+)) (EC:1.1.1.41)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FL71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02812.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L2_059_382G1_scaffold_1349_8
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(7204..9135)
DNA (1932bp) protein (644aa)
aconitase (EC:4.2.1.3)
Putative aconitate hydratase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1B1_9FIRM
Putative aconitate hydratase {ECO:0000313|EMBL:CDB02811.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L2_059_382G1_scaffold_1349_9
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(9136..9780)
DNA (645bp) protein (215aa)
Transcriptional regulator GntR family n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ES98_9FIRM
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDB02810.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
GntR family transcriptional regulator
L2_059_382G1_scaffold_1349_10
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(9777..11153)
DNA (1377bp) protein (459aa)
HMGL-like protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E245_9FIRM
HMGL-like protein {ECO:0000313|EMBL:CDA90626.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
pyruvate carboxyltransferase
L2_059_382G1_scaffold_1349_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11427..12395
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KQL0_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EDS08304.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
alpha/beta hydrolase fold protein
L2_059_382G1_scaffold_1349_12
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

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12426..13442
DNA (1017bp) protein (339aa)
Bacitracin ABC transporter, ATP-binding protein BcrA family protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2L585_9FIRM
Bacitracin ABC transporter, ATP-binding protein BcrA family protein {ECO:0000313|EMBL:ERJ82258.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral taxon 113 str. W5053.;"
hypothetical protein
L2_059_382G1_scaffold_1349_13
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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13442..14230
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9KC42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS41027.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L2_059_382G1_scaffold_1349_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15503..15853
DNA (351bp) protein (117aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9N0_9CLOT
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEG31795.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
transcriptional regulator, ArsR family
L2_059_382G1_scaffold_1349_15
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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15924..16493
DNA (570bp) protein (190aa)
Putative dihydroxyacetone kinase regulator n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6ML40_9FIRM
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:CDB86517.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
transcriptional regulator
L2_059_382G1_scaffold_1349_16
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16774..17442
DNA (669bp) protein (223aa)
Radical SAM domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBR7_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EET61870.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L2_059_382G1_scaffold_1349_17
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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17414..17920
DNA (507bp) protein (169aa)
Radical SAM domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQJ4_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EDN01800.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_059_382G1_scaffold_1349_18
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17990..19183
DNA (1194bp) protein (398aa)
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
S-adenosylmethionine synthase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VR89_CLOSH
L2_059_382G1_scaffold_1349_19
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19294..19899
DNA (606bp) protein (202aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JTG9_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC44276.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_059_382G1_scaffold_1349_20
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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20021..20536
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FMH1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY06240.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L2_059_382G1_scaffold_1349_21
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20695..20916
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PNJ5_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHO81997.1}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium infirmum F0142.;"
CopG family transcriptional regulator
L2_059_382G1_scaffold_1349_22
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

21438..22313
DNA (876bp) protein (292aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Methylenetetrahydrofolate reductase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1C3_9FIRM
putative 5,10-methylenetetrahydrofolate reductase
L2_059_382G1_scaffold_1349_23
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

22411..23172
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FL81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02822.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Vitamin B12 dependent methionine synthase activation subunit
L2_059_382G1_scaffold_1349_24
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

23181..24902
DNA (1722bp) protein (574aa)
Homocysteine S-methyltransferase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EQD2_9FIRM
Homocysteine S-methyltransferase {ECO:0000313|EMBL:CDB02823.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
homocysteine S-methyltransferase
L2_059_382G1_scaffold_1349_25
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24988..25458
DNA (471bp) protein (157aa)
Methionine synthase (EC:2.1.1.13)
B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DV78_9FIRM
B12 binding domain./Pterin binding enzyme./Homocysteine S-methyltransferase {ECO:0000313|EMBL:CDA88799.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L2_059_382G1_scaffold_1349_26
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25501..26142)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1ASZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY66544.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L2_059_382G1_scaffold_1349_27
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26123..26887)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1ASZ0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDO60305.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L2_059_382G1_scaffold_1349_28
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26884..27363)
DNA (480bp) protein (160aa)
AbrB family transcriptional regulator n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1ASY9_9FIRM
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EDO60304.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L2_059_382G1_scaffold_1349_29
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27444..27923)
DNA (480bp) protein (160aa)
RNA polymerase sigma-70 factor ECF subfamily n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GRH2_9FIRM
RNA polymerase sigma-70 factor ECF subfamily {ECO:0000313|EMBL:CDE30034.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
RNA polymerase sigma factor
L2_059_382G1_scaffold_1349_30
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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comp(28120..28452)
DNA (333bp) protein (111aa)
Helix-turn-helix n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DSW5_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CDA91593.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
Predicted transcriptional regulators
Displaying items 1-30 of 57 in total

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