ggKbase home page

L2_059_382G1_scaffold_550

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_059_382G1_scaffold_550_1
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

879..1616
DNA (738bp) protein (246aa)
Copper homeostasis protein CutC n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K6AB84_9PORP
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
copper homeostasis protein
L2_059_382G1_scaffold_550_2
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1647..3725
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BCQ1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC95792.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
hypothetical protein
L2_059_382G1_scaffold_550_3
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3776..3970
DNA (195bp) protein (65aa)
PspC domain protein n=2 Tax=Parabacteroides johnsonii RepID=B7BCQ0_9PORP
PspC domain protein {ECO:0000313|EMBL:EEC95791.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Putative stress-responsive transcriptional regulator
L2_059_382G1_scaffold_550_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3987..5006
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Parabacteroides johnsonii RepID=B7BCP9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12951.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L2_059_382G1_scaffold_550_5
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5072..7099
DNA (2028bp) protein (676aa)
UvrABC system protein B n=3 Tax=Parabacteroides johnsonii RepID=K5YH51_9PORP
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
excinuclease ABC subunit B
L2_059_382G1_scaffold_550_6
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7114..7944
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DMD0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX77121.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L2_059_382G1_scaffold_550_7
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7947..10127)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZBD4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12954.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L2_059_382G1_scaffold_550_8
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10257..10958
DNA (702bp) protein (234aa)
Cyclic nucleotide-binding domain protein n=3 Tax=Parabacteroides RepID=B7BCP4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12955.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
transcriptional regulator
L2_059_382G1_scaffold_550_9
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11021..11830)
DNA (810bp) protein (270aa)
3-deoxy-8-phosphooctulonate synthase {ECO:0000313|EMBL:EEC95795.1}; EC=2.5.1.55 {ECO:0000313|EMBL:EEC95795.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
3-deoxy-8-phosphooctulonate synthase n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BCP3_9PORP
L2_059_382G1_scaffold_550_10
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11883..12149
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5YH55_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12957.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
L2_059_382G1_scaffold_550_11
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12135..13052)
DNA (918bp) protein (306aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DAI1_9PORP
L2_059_382G1_scaffold_550_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13125..14135)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=3 Tax=Parabacteroides merdae RepID=A7AKJ8_9PORP
glyceraldehyde 3-phosphate dehydrogenase
L2_059_382G1_scaffold_550_13
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14320..14697)
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZNU6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12960.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L2_059_382G1_scaffold_550_14
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14654..15064)
DNA (411bp) protein (137aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7BCN9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79210.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L2_059_382G1_scaffold_550_15
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15071..15292)
DNA (222bp) protein (74aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7BCN8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC95821.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
hypothetical protein
L2_059_382G1_scaffold_550_16
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15383..16234)
DNA (852bp) protein (284aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BCN7_9PORP
prmA; 50S ribosomal protein L11 methyltransferase
L2_059_382G1_scaffold_550_17
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16621..19356
DNA (2736bp) protein (912aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DG53_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX79205.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
alpha-L-rhamnosidase N-terminal domain-containing protein
L2_059_382G1_scaffold_550_18
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


19486..19803
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=7 Tax=Parabacteroides RepID=A7AKI8_9PORP
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
rplU; 50S ribosomal protein L21
L2_059_382G1_scaffold_550_19
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


19826..20092
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=12 Tax=Bacteroidales RepID=RL27_PARD8
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L2_059_382G1_scaffold_550_20
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20363..20905
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5YH61_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12967.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
lipoprotein
L2_059_382G1_scaffold_550_21
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20997..22271
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=Parabacteroides johnsonii RepID=B7BCN1_9PORP
Serine-tRNA ligase {ECO:0000313|EMBL:EKN12968.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
L2_059_382G1_scaffold_550_22
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22264..22395)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BCN0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC95813.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
L2_059_382G1_scaffold_550_23
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22426..24864)
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZNV7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12970.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
pyridine nucleotide-disulfide oxidoreductase
L2_059_382G1_scaffold_550_24
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24929..25294)
DNA (366bp) protein (122aa)
Transcriptional regulator, MarR family n=3 Tax=Parabacteroides RepID=B7BCM7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12971.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
transcriptional regulator
L2_059_382G1_scaffold_550_25
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25349..25522
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BCM6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC95809.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
L2_059_382G1_scaffold_550_26
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25519..26496)
DNA (978bp) protein (326aa)
Dihydroorotate dehydrogenase 2 {ECO:0000313|EMBL:EEC95808.1}; EC=1.3.98.1 {ECO:0000313|EMBL:EEC95808.1};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate dehydrogenase 2 n=3 Tax=Parabacteroides RepID=B7BCM5_9PORP
L2_059_382G1_scaffold_550_27
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26582..27250)
DNA (669bp) protein (223aa)
Pyridoxal phosphate enzyme, YggS family n=3 Tax=Parabacteroides RepID=B7BCM4_9PORP
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:EKN12973.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L2_059_382G1_scaffold_550_28
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27247..27753)
DNA (507bp) protein (169aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7BCM3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC95806.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
hypothetical protein
L2_059_382G1_scaffold_550_29
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28045..28506)
DNA (462bp) protein (154aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
Nucleoside diphosphate kinase n=3 Tax=Parabacteroides RepID=B7BCM1_9PORP
ndk; nucleoside diphosphate kinase
L2_059_382G1_scaffold_550_30
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28861..29484)
DNA (624bp) protein (208aa)
Resolvase, N-terminal domain protein n=3 Tax=Parabacteroides RepID=B7BCM0_9PORP
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEC95803.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
mpi; multiple promoter invertase
Displaying items 1-30 of 35 in total

View Taxonomy