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L3_058_000G1_scaffold_306

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_306_1
unknown

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2..211
DNA (210bp) protein (70aa)

This feature has no annotations

L3_058_000G1_scaffold_306_2
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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305..862
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MDA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65822.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
transcriptional regulator, XRE family with cupin sensor
L3_058_000G1_scaffold_306_3
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

878..1756
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4U0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65823.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
beta-lactamase domain-containing protein
L3_058_000G1_scaffold_306_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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1892..2104
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZEN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12880.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
DNA-binding domain-containing protein, AraC-type
L3_058_000G1_scaffold_306_5
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2137..2571)
DNA (435bp) protein (145aa)
Cell wall assembly/cell proliferation coordinating protein KNR4 n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GZH0_9FIRM
Cell wall assembly/cell proliferation coordinating protein KNR4 {ECO:0000313|EMBL:CCY17956.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
Cell wall assembly/cell proliferation coordinating protein, KNR4
L3_058_000G1_scaffold_306_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3245..5119
DNA (1875bp) protein (625aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D2S4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55663.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative surface layer protein
L3_058_000G1_scaffold_306_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5216..6364
DNA (1149bp) protein (383aa)
YibE/F-like protein n=3 Tax=Clostridiales RepID=G9YRX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55664.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Predicted multitransmembrane protein
L3_058_000G1_scaffold_306_8
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6492..7181
DNA (690bp) protein (230aa)
RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKN3_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative RNA polymerase sigma factor
L3_058_000G1_scaffold_306_9
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7278..8468)
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZB4_CLOSW
Uncharacterized protein {ECO:0000313|EMBL:EXG87562.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein
L3_058_000G1_scaffold_306_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8571..9605)
DNA (1035bp) protein (345aa)
Phosphate transporter family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMX4_9FIRM
Phosphate transporter family protein {ECO:0000313|EMBL:EHM53753.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
phosphate/sulfate permease
L3_058_000G1_scaffold_306_11
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9714..10097)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJ82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15906.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
conjugation protein
L3_058_000G1_scaffold_306_12
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10510..11583)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GQE7_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO39239.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_058_000G1_scaffold_306_13
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11768..13027)
DNA (1260bp) protein (420aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Y2_9FIRM
L3_058_000G1_scaffold_306_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13073..13855)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7U0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55878.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
traX; TraX
L3_058_000G1_scaffold_306_15
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13860..15032)
DNA (1173bp) protein (391aa)
AICARFT/IMPCHase bienzyme n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Y1_9FIRM
AICARFT/IMPCHase bienzyme {ECO:0000313|EMBL:EDM98002.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
5-aminoimidazole-4-carboxamide ribonucleotide transformylase
L3_058_000G1_scaffold_306_16
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15036..15743)
DNA (708bp) protein (236aa)
Putative IMP cyclohydrolase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0Y0_9FIRM
Putative IMP cyclohydrolase {ECO:0000313|EMBL:EDM98001.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative IMP cyclohydrolase
L3_058_000G1_scaffold_306_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15773..16405)
DNA (633bp) protein (211aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2APW1_9CLOT
phosphoribosylglycinamide formyltransferase
L3_058_000G1_scaffold_306_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16402..17442)
DNA (1041bp) protein (347aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YND4_9FIRM
L3_058_000G1_scaffold_306_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17499..18890)
DNA (1392bp) protein (464aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
purF; putative amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHR6_9FIRM
L3_058_000G1_scaffold_306_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18891..19607)
DNA (717bp) protein (239aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0X6_9FIRM
L3_058_000G1_scaffold_306_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19609..20103)
DNA (495bp) protein (165aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YND0_9FIRM
L3_058_000G1_scaffold_306_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20426..21508)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AQR9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI62465.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_058_000G1_scaffold_306_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21531..23765)
DNA (2235bp) protein (745aa)
Polysaccharide pyruvyl transferase CsaB n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMX6_9FIRM
Polysaccharide pyruvyl transferase CsaB {ECO:0000313|EMBL:EHM53755.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative polysaccharide pyruvyl transferase
L3_058_000G1_scaffold_306_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23879..24409
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YMX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF53081.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_058_000G1_scaffold_306_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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24497..25054
DNA (558bp) protein (186aa)
PAP2 family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0X0_9FIRM
PAP2 family protein {ECO:0000313|EMBL:EDM97991.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Membrane-associated phospholipid phosphatase
L3_058_000G1_scaffold_306_26
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25051..25770
DNA (720bp) protein (240aa)
Putative MTA/SAH nucleosidase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DHZ1_CLOS4
Putative MTA/SAH nucleosidase {ECO:0000313|EMBL:ERI95978.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
MTA/SAH nucleosidase
L3_058_000G1_scaffold_306_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25830..26204)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=3 Tax=Clostridiales RepID=G9YMX9_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
50S ribosomal protein L7/L12
L3_058_000G1_scaffold_306_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26257..26784)
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AQR4_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rplJ; 50S ribosomal protein L10
L3_058_000G1_scaffold_306_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27058..27750)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=3 Tax=Clostridiales RepID=G9YMY2_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
rplA; 50S ribosomal protein L1
L3_058_000G1_scaffold_306_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27769..28194)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAP4_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
50S ribosomal protein L11
Displaying items 1-30 of 123 in total

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