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L3_058_000G1_scaffold_3687

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_3687_1
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2..136)
DNA (135bp) protein (45aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1406863 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus Z172.;"
Probable endonuclease 4 n=1 Tax=Staphylococcus aureus subsp. aureus 21269 RepID=F9L2P7_STAAU
putative endonuclease
L3_058_000G1_scaffold_3687_2
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(146..1492)
DNA (1347bp) protein (449aa)
DEAD/DEAH box helicase domain protein n=254 Tax=Staphylococcus aureus RepID=A5IT86_STAA9
putative helicase
ATP-dependent RNA helicase {ECO:0000313|EMBL:AGU61645.1}; TaxID=1193576 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus CN1.;"
L3_058_000G1_scaffold_3687_3
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1606..2706)
DNA (1101bp) protein (367aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
Uncharacterized protein n=4 Tax=Staphylococcus aureus subsp. aureus RepID=U3NLT9_STAAU
hypothetical protein
L3_058_000G1_scaffold_3687_4
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2709..3386)
DNA (678bp) protein (226aa)
Uncharacterized protein n=5 Tax=Staphylococcus aureus subsp. aureus RepID=U3NK10_STAAU
hypothetical protein
Putative cytosolic protein {ECO:0000313|EMBL:AFH69801.1}; TaxID=1155084 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus 71193.;"
L3_058_000G1_scaffold_3687_5
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3517..4623)
DNA (1107bp) protein (369aa)
RNA polymerase sigma factor SigA n=409 Tax=Staphylococcus aureus RepID=SIGA_STAA8
rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
L3_058_000G1_scaffold_3687_6
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4847..6646)
DNA (1800bp) protein (600aa)
DNA primase {ECO:0000255|HAMAP-Rule:MF_00974}; EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00974};; TaxID=282458 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain MRSA252).;"
DNA primase n=4 Tax=Staphylococcus aureus subsp. aureus RepID=G8R9S5_STAAU
dnaG; DNA primase
L3_058_000G1_scaffold_3687_7
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6707..7255)
DNA (549bp) protein (183aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000255|HAMAP-Rule:MF_00921};; TaxID=359786 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain JH9).;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Staphylococcus aureus subsp. aureus C427 RepID=D2FDN3_STAAU
hypothetical protein
L3_058_000G1_scaffold_3687_8
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7292..7525)
DNA (234bp) protein (78aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000255|HAMAP-Rule:MF_00921};; TaxID=451516 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain USA300 / TCH1516).;"
Putative pyruvate, phosphate dikinase regulatory protein n=4 Tax=Staphylococcus aureus subsp. aureus RepID=C5PZN4_STAAU
hypothetical protein
L3_058_000G1_scaffold_3687_9
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7536..8027)
DNA (492bp) protein (164aa)
CBS domain containing protein n=282 Tax=Staphylococcus aureus RepID=A5IT92_STAA9
CBS domain containing protein
Strain SA-120 Contig627, whole genome shotgun sequence {ECO:0000313|EMBL:KIT96828.1}; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
L3_058_000G1_scaffold_3687_10
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


8494..9885
DNA (1392bp) protein (464aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00253}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00253};; Glycyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00253}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF_00253};; TaxID=158878 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain Mu50 / ATCC 700699).;"
Glycine--tRNA ligase n=394 Tax=Staphylococcus aureus RepID=SYG_STAA1
L3_058_000G1_scaffold_3687_11
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10036..10782)
DNA (747bp) protein (249aa)
DNA repair protein RecO n=1 Tax=Staphylococcus aureus subsp. aureus IS-160 RepID=H4G3C9_STAAU
putative recombination protein O
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus.;"
L3_058_000G1_scaffold_3687_12
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10810..11709)
DNA (900bp) protein (300aa)
GTPase Era n=397 Tax=Staphylococcus aureus RepID=ERA_STAA1
GTP-binding protein era
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=367830 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain USA300).;"
L3_058_000G1_scaffold_3687_13
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11710..12114)
DNA (405bp) protein (135aa)
Cytidine deaminase {ECO:0000313|EMBL:AFH69809.1}; EC=3.5.4.5 {ECO:0000313|EMBL:AFH69809.1};; TaxID=1155084 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus 71193.;"
Cytidine deaminase n=73 Tax=Staphylococcus aureus RepID=C7ZXF4_STAAU
cytidine deaminase
L3_058_000G1_scaffold_3687_14
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12125..12469)
DNA (345bp) protein (115aa)
Diacylglycerol kinase, putative {ECO:0000313|EMBL:ABD30746.1}; EC=2.7.1.107 {ECO:0000313|EMBL:ABD30746.1};; TaxID=93061 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain NCTC 8325).;"
Diacylglycerol kinase n=5 Tax=Staphylococcus aureus subsp. aureus RepID=G8R9T2_STAAU
putative diacylglycerol kinase
L3_058_000G1_scaffold_3687_15
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12472..12939)
DNA (468bp) protein (156aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus.;"
Endoribonuclease YbeY n=6 Tax=Staphylococcus aureus subsp. aureus RepID=G8R9T3_STAAU
hypothetical protein
L3_058_000G1_scaffold_3687_16
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12940..13887)
DNA (948bp) protein (316aa)
Phoh n=357 Tax=Staphylococcus aureus RepID=I0C4T3_STAA5
phoH; Phosphate starvation-induced protein phoH homologue
KH domain protein {ECO:0000313|EMBL:EES92742.1}; TaxID=450394 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus USA300_TCH959.;"
L3_058_000G1_scaffold_3687_17
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14191..14889)
DNA (699bp) protein (233aa)
Uncharacterized protein n=5 Tax=Staphylococcus aureus subsp. aureus RepID=U3NMA9_STAAU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY89685.1}; TaxID=1406863 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus Z172.;"
L3_058_000G1_scaffold_3687_18
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14906..15895)
DNA (990bp) protein (330aa)
UPF0365 protein SAB1445c n=167 Tax=Staphylococcus aureus RepID=Y1445_STAAB
SigmaW regulon antibacterial protein
UPF0365 protein SAOUHSC_01676 {ECO:0000255|HAMAP-Rule:MF_01562}; TaxID=93061 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain NCTC 8325).;"
L3_058_000G1_scaffold_3687_19
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15913..16620)
DNA (708bp) protein (236aa)
Uncharacterized protein n=392 Tax=Staphylococcus aureus RepID=A5ITA2_STAA9
hypothetical protein
Putative activity regulator of membrane protease YbbK {ECO:0000313|EMBL:AGY89687.1}; TaxID=1406863 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus Z172.;"
L3_058_000G1_scaffold_3687_20
Staphylococcus pasteuri, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16840..17016)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=34 Tax=Staphylococcus aureus RepID=I0C4T7_STAA5
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1276282 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus pasteuri SP1.;"
L3_058_000G1_scaffold_3687_21
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17309..17701)
DNA (393bp) protein (131aa)
30S ribosomal protein S12 methylthiotransferase {ECO:0000313|EMBL:AIL58119.1}; MiaB family protein%2C possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:CKH19307.1}; EC=2.-.-.- {ECO:0000313|EMBL:CKH19307.1};; MiaB family protein, possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:CEK44621.1}; EC=2.-.-.- {ECO:0000313|EMBL:CEK44621.1};; Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB {ECO:0000313|EMBL:CEF81446.1}; EC=2.-.-.- {ECO:0000313|EMBL:CEF81446.1};; TaxID=1280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus.;"
tRNA-I(6)A37 thiotransferase enzyme MiaB n=3 Tax=Staphylococcus aureus RepID=D2G9P3_STAAU
hypothetical protein
Displaying 21 items

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