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L3_058_000G1_scaffold_4034

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_4034_1
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(123..455)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E172_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB99826.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
DOPA 4,5-dioxygenase
L3_058_000G1_scaffold_4034_2
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(504..1403)
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E173_PSEDT
LysR family transcriptional regulator {ECO:0000313|EMBL:EGB99827.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
LysR family transcriptional regulator
L3_058_000G1_scaffold_4034_3
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1512..3029
DNA (1518bp) protein (506aa)
Choline-sulfatase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E174_PSEDT
Choline-sulfatase {ECO:0000313|EMBL:EGB99828.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
betC; choline sulfatase
L3_058_000G1_scaffold_4034_4
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3042..3971
DNA (930bp) protein (310aa)
Choline ABC transporter periplasmic binding protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E175_PSEDT
Choline ABC transporter periplasmic binding protein {ECO:0000313|EMBL:EGB99829.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
glycine betaine ABC transporter substrate-binding protein
L3_058_000G1_scaffold_4034_5
unknown

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4008..4112
DNA (105bp) protein (35aa)

This feature has no annotations

L3_058_000G1_scaffold_4034_6
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4116..5681
DNA (1566bp) protein (522aa)
Sulfate transporter n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E176_PSEDT
Sulfate transporter {ECO:0000313|EMBL:EGB99830.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
putative SulP family transporter
L3_058_000G1_scaffold_4034_7
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5781..6605)
DNA (825bp) protein (275aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
aroE; AroE (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E177_PSEDT
L3_058_000G1_scaffold_4034_8
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6631..7542)
DNA (912bp) protein (304aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E178_PSEDT
coproporphyrinogen III oxidase
L3_058_000G1_scaffold_4034_9
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7677..8654
DNA (978bp) protein (326aa)
Alcohol dehydrogenase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E179_PSEDT
Alcohol dehydrogenase {ECO:0000313|EMBL:EGB99833.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
alcohol dehydrogenase
L3_058_000G1_scaffold_4034_10
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8782..9096)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E180_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB99834.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_4034_11
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9794..10351)
DNA (558bp) protein (186aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; TaxID=1215088 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida HB3267.;"
Threonylcarbamoyl-AMP synthase n=1 Tax=Pseudomonas putida HB3267 RepID=L0FB82_PSEPU
SUA5/yciO/yrdC domain-containing protein
L3_058_000G1_scaffold_4034_12
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10393..11490)
DNA (1098bp) protein (366aa)
DNA protecting protein DprA n=1 Tax=Pseudomonas putida HB3267 RepID=L0FDP0_PSEPU
DNA protecting protein DprA
DNA processing protein DprA {ECO:0000313|EMBL:KGK28355.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
L3_058_000G1_scaffold_4034_13
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11699..12205
DNA (507bp) protein (169aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Peptide deformylase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E185_PSEDT
peptide deformylase
L3_058_000G1_scaffold_4034_14
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12266..13198
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Methionyl-tRNA formyltransferase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E186_PSEDT
fmt; methionyl-tRNA formyltransferase
L3_058_000G1_scaffold_4034_15
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13195..14505
DNA (1311bp) protein (437aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
16S rRNA m(5)C-967 methyltransferase n=4 Tax=Pseudomonas putida RepID=A5VWJ7_PSEP1
sun protein
L3_058_000G1_scaffold_4034_16
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14529..15902
DNA (1374bp) protein (458aa)
Potassium transporter peripheral membrane component n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E189_PSEDT
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:EGB99820.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
trkA; TrkA family protein
L3_058_000G1_scaffold_4034_17
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15914..16222
DNA (309bp) protein (103aa)
TPR repeat-containing protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E190_PSEDT
TPR repeat-containing protein {ECO:0000313|EMBL:EGB99821.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Tetratricopeptide domain-containing protein
Displaying 17 items

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