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L3_058_000G1_scaffold_3416

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_3416_1
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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208..372
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBG3_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB96248.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_3416_2
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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433..1749
DNA (1317bp) protein (439aa)
Lytic murein transglycosylase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBG2_PSEDT
Lytic murein transglycosylase {ECO:0000313|EMBL:EGB96247.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
lytic murein transglycosylase
L3_058_000G1_scaffold_3416_3
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1844..2782)
DNA (939bp) protein (313aa)
Peptidase U61 LD-carboxypeptidase A n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KJX3_PSEPG
peptidase U61 LD-carboxypeptidase A
Peptidase U61 LD-carboxypeptidase A {ECO:0000313|EMBL:ABZ00737.1}; TaxID=76869 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain GB-1).;"
L3_058_000G1_scaffold_3416_4
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2891..3907)
DNA (1017bp) protein (339aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
lipA; LipA protein (EC:2.8.1.8)
Lipoyl synthase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF9_PSEDT
L3_058_000G1_scaffold_3416_5
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3910..4557)
DNA (648bp) protein (216aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Octanoyltransferase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF8_PSEDT
lipoyltransferase
L3_058_000G1_scaffold_3416_6
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4557..4832)
DNA (276bp) protein (92aa)
UPF0250 protein G1E_24592 n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF7_PSEDT
UPF0250 protein G1E_24592 {ECO:0000256|HAMAP-Rule:MF_00659}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_3416_7
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4903..6063)
DNA (1161bp) protein (387aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF6_PSEDT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EGB96258.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
L3_058_000G1_scaffold_3416_8
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6335..7336)
DNA (1002bp) protein (334aa)
Rare lipoprotein A n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF5_PSEDT
Rare lipoprotein A {ECO:0000313|EMBL:EGB96257.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Rare lipoprotein A family
L3_058_000G1_scaffold_3416_9
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7336..8382)
DNA (1047bp) protein (349aa)
Lytic murein transglycosylase B n=4 Tax=Pseudomonas putida RepID=I3UTF7_PSEPU
lytic murein transglycosylase B
Lytic murein transglycosylase B {ECO:0000313|EMBL:AFK68778.1}; TaxID=231023 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida ND6.;"
L3_058_000G1_scaffold_3416_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8364..9506)
DNA (1143bp) protein (381aa)
Rod shape-determining protein RodA n=2 Tax=Pseudomonas RepID=V6J762_PSEPU
Rod shape-determining protein RodA {ECO:0000313|EMBL:EST15583.1}; TaxID=1399145 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S610.;"
rod shape-determining protein RodA
L3_058_000G1_scaffold_3416_11
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9506..11395)
DNA (1890bp) protein (630aa)
Peptidoglycan glycosyltransferase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF2_PSEDT
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:EGB96254.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
peptidoglycan glycosyltransferase
L3_058_000G1_scaffold_3416_12
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11412..11879)
DNA (468bp) protein (156aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBF1_PSEDT
rRNA large subunit methyltransferase
L3_058_000G1_scaffold_3416_13
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11890..12309)
DNA (420bp) protein (140aa)
Ribosomal silencing factor RsfS n=8 Tax=Pseudomonas RepID=A5W9J4_PSEP1
Iojap-like protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=76869 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain GB-1).;"
L3_058_000G1_scaffold_3416_14
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12353..13045)
DNA (693bp) protein (231aa)
nadD; NadD protein (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1215087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S12.;"
Probable nicotinate-nucleotide adenylyltransferase n=2 Tax=Pseudomonas putida RepID=E4R7F2_PSEPB
L3_058_000G1_scaffold_3416_15
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13014..14285)
DNA (1272bp) protein (424aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBE8_PSEDT
L3_058_000G1_scaffold_3416_16
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14612..15280
DNA (669bp) protein (223aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Pseudomonas putida HB3267 RepID=L0FSH0_PSEPU
3-methyladenine DNA glycosylase
L3_058_000G1_scaffold_3416_17
Pseudomonas sp. GM84, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15283..16599
DNA (1317bp) protein (439aa)
phosphoesterase n=1 Tax=Pseudomonas putida RepID=UPI00031668CE
PA-phosphatase-like phosphoesterase
Putative membrane-associated protein {ECO:0000313|EMBL:EJN37047.1}; TaxID=1144340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM84.;"
L3_058_000G1_scaffold_3416_18
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16678..17268)
DNA (591bp) protein (197aa)
Peptidase S16 lon domain-containing protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBE3_PSEDT
Peptidase S16 lon domain-containing protein {ECO:0000313|EMBL:EGB96267.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_3416_19
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17278..17994)
DNA (717bp) protein (239aa)
LrgB family protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBE2_PSEDT
LrgB family protein {ECO:0000313|EMBL:EGB96266.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
LrgB protein
L3_058_000G1_scaffold_3416_20
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17991..18353)
DNA (363bp) protein (121aa)
murein hydrolase transporter LrgA n=1 Tax=Pseudomonas putida RepID=UPI000318BF18
LrgA family protein
LrgA family protein {ECO:0000313|EMBL:AFO49527.1}; TaxID=1196325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain DOT-T1E).;"
L3_058_000G1_scaffold_3416_21
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18496..18951
DNA (456bp) protein (152aa)
Dehydratase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0EBD9_PSEDT
Dehydratase {ECO:0000313|EMBL:EGB96269.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
MaoC family dehydratase
L3_058_000G1_scaffold_3416_22
unknown

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18978..19058
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 22 items

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